View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16521_low_103 (Length: 202)
Name: NF16521_low_103
Description: NF16521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16521_low_103 |
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Alignment Details
Target: chr7 (Bit Score: 168; Significance: 3e-90; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 6 - 185
Target Start/End: Complemental strand, 47074549 - 47074370
Alignment:
| Q |
6 |
ggtagattatactggtaagtagctatttttctattgactaaggtgaataatagtactaatttcatatctgtagtttgttaagtgcttcgctatgtgtcca |
105 |
Q |
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| T |
47074549 |
ggtagatttcactggtaagtagctatttttctattgactaaggtgaataatagtactaatttcatatctgtagtttgttaagtgcttcactatgtgtcca |
47074450 |
T |
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| Q |
106 |
gcttcaaatggaaatcctcaacagccagattctttgcattacatggatttatctggtcggttaaattcatatcaaaaggt |
185 |
Q |
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| T |
47074449 |
gcttcaaatggaaatcctcaacagccagattctttgcattacatggatttatctggtcggttaaattcatatcaaaaggt |
47074370 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 56 - 185
Target Start/End: Complemental strand, 47056526 - 47056397
Alignment:
| Q |
56 |
tagtactaatttcatatctgtagtttgttaagtgcttcgctatgtgtccagcttcaaatggaaatcctcaacagccagattctttgcattacatggattt |
155 |
Q |
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| T |
47056526 |
tagtactaatttcatctttgtagtttgtgaaaagcttcaatgttttttcagcttcaaatggagatcctcaaaagtcagattctttgcattacatcgatga |
47056427 |
T |
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| Q |
156 |
atctggtcggttaaattcatatcaaaaggt |
185 |
Q |
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| T |
47056426 |
atctggtcggttaaattcataccaaaaggt |
47056397 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 34 - 185
Target Start/End: Original strand, 18230881 - 18231036
Alignment:
| Q |
34 |
ttctattgactaaggtgaataatagtactaatttcatatctgtagtttgttaagtgcttcgctatgt----gtccagcttcaaatggaaatcctcaacag |
129 |
Q |
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| T |
18230881 |
ttctattaattaaggtcaataatagtactaatttcatatttgtagtttgttaatagcttcaatatatatatgtccagcttcaaacggaagtcctcaacag |
18230980 |
T |
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| Q |
130 |
ccagattctttgcattacatggatttatctggtcggttaaattcatatcaaaaggt |
185 |
Q |
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| T |
18230981 |
ccagattctttgcattacatcgatttatccggtcggttaaattcataccaaaaggt |
18231036 |
T |
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