View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16521_low_11 (Length: 562)
Name: NF16521_low_11
Description: NF16521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16521_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 452; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 452; E-Value: 0
Query Start/End: Original strand, 17 - 538
Target Start/End: Original strand, 55576039 - 55576564
Alignment:
| Q |
17 |
actatcctgaagagcttatg---tcaaattatttctaaacggttttttataaactatcctgaagagcttatctcatgttatctgcaagatatcaagatgt |
113 |
Q |
| |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55576039 |
actatcctgaagagcttatgaagtcaaattatttctaaacggttttttataaactatcctgaagagcttatctcatgttatctgcaagatatcaagatgt |
55576138 |
T |
|
| Q |
114 |
acgaagtgtgatggctgaaggtataattgaaataagaggagtatataatctatcaaggatagagattagatggttagcaagcaaaacttaattccaacac |
213 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
55576139 |
acgaagtgtgatggctgaaggtataattgaaataagaggagtatataatctatcaaggaaagagattagatggttagcaagcaaaacttaattccaacac |
55576238 |
T |
|
| Q |
214 |
aaccttctcaattgataaagtttcaccactttttattttgctacttaaacaaacaaacttgtacataaccttagcttgaaatagttgaaaataattgaac |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55576239 |
aaccttctcaattgataaagtttcaccactttttattttgctacttaaacaaacaaacttgtacataaccttagcttgaaatagttgaaaataattgaac |
55576338 |
T |
|
| Q |
314 |
gatttaatttgtc-agtctctgtggatcgataatttaaactaatttgatactgcaaatcgcacttatcaagagttcattgtgttttagctaagattcaca |
412 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| |
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| T |
55576339 |
gatttaatttgtcaagtctctgtggatcgataatttaaactaatttgatactgcaaatcgcacttatcaagagttcattgtgttatatctaagattcacc |
55576438 |
T |
|
| Q |
413 |
ccgagaagtttaaccactaagacatctttccatggggttcgcatatctttaagaacttcgatatcaagaannnnnnnnggcaatagagtcgttttctgtt |
512 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||| |
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| T |
55576439 |
ccgagaagtttaaccactaagacatctttccatggggttcgcatatctttaagaacttcgatatcaagaaaaacttttggcaagagagtcgttttctgtt |
55576538 |
T |
|
| Q |
513 |
tacaagctcaattcgaactagctttt |
538 |
Q |
| |
|
||||||||||||| ||||| |||||| |
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|
| T |
55576539 |
tacaagctcaatttgaacttgctttt |
55576564 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 152 - 307
Target Start/End: Complemental strand, 42534396 - 42534242
Alignment:
| Q |
152 |
gagtatataatctatcaaggatagagattagatggttagcaagcaaaacttaattccaacacaaccttctcaattgataaagtttcaccactttttattt |
251 |
Q |
| |
|
|||||||||||| |||||| | | | |||||| | ||||| | ||||||||||| ||||||||||||||||| ||| ||||||||| |||||||||||| |
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| T |
42534396 |
gagtatataatcaatcaagaaaatacattagaggattagcgaacaaaacttaatcccaacacaaccttctcagctga-aaagtttcatcactttttattt |
42534298 |
T |
|
| Q |
252 |
tgctacttaaacaaacaaacttgtacataaccttagcttgaaatagttgaaaataa |
307 |
Q |
| |
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|| ||| ||||||||||||| || | || | |||||||||||| || ||||||| |
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|
| T |
42534297 |
tgtcactcaaacaaacaaactcttagaaaatcctagcttgaaataatttaaaataa |
42534242 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 152 - 307
Target Start/End: Complemental strand, 42527821 - 42527667
Alignment:
| Q |
152 |
gagtatataatctatcaaggatagagattagatggttagcaagcaaaacttaattccaacacaaccttctcaattgataaagtttcaccactttttattt |
251 |
Q |
| |
|
|||||||||||| |||||| | | | |||||| | |||| | ||||||||||| ||| |||||||| | ||| ||| ||||||||| ||||||||| || |
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|
| T |
42527821 |
gagtatataatcaatcaagaaaatacattagaggattagtgaacaaaacttaatcccagcacaacctgcccaactga-aaagtttcatcactttttactt |
42527723 |
T |
|
| Q |
252 |
tgctacttaaacaaacaaacttgtacataaccttagcttgaaatagttgaaaataa |
307 |
Q |
| |
|
|| || |||||||||||||| || | |||| |||||||||||| || ||||||| |
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|
| T |
42527722 |
tgtcacgcaaacaaacaaacttttagaaaaccctagcttgaaataatttaaaataa |
42527667 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 53 - 84
Target Start/End: Original strand, 55576026 - 55576057
Alignment:
| Q |
53 |
cggttttttataaactatcctgaagagcttat |
84 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
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|
| T |
55576026 |
cggttttttataaactatcctgaagagcttat |
55576057 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 83 - 170
Target Start/End: Original strand, 19086491 - 19086578
Alignment:
| Q |
83 |
atctcatgttatctgcaagatatcaagatgtacgaagtgtgatggctgaaggtataattgaaataagaggagtatataatctatcaag |
170 |
Q |
| |
|
||||| |||||| ||| ||| |||||||||||| ||| | || |||||||||||||||||||||| ||| ||||||||||||||| |
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|
| T |
19086491 |
atctcctgttatatgcgagacatcaagatgtacaaagagcgacatgtgaaggtataattgaaataagaagagcatataatctatcaag |
19086578 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 129 - 168
Target Start/End: Original strand, 31930719 - 31930758
Alignment:
| Q |
129 |
tgaaggtataattgaaataagaggagtatataatctatca |
168 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||| |||| |
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|
| T |
31930719 |
tgaaggtataattgaaataagaggagtttataatcgatca |
31930758 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 135 - 170
Target Start/End: Original strand, 49588782 - 49588817
Alignment:
| Q |
135 |
tataattgaaataagaggagtatataatctatcaag |
170 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||| |
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|
| T |
49588782 |
tataattgaaataagaggagtatataatcgatcaag |
49588817 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 135 - 185
Target Start/End: Complemental strand, 8048120 - 8048070
Alignment:
| Q |
135 |
tataattgaaataagaggagtatataatctatcaaggatagagattagatg |
185 |
Q |
| |
|
||||||| ||||||||||||||||||||| |||||||| | | |||||||| |
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|
| T |
8048120 |
tataattaaaataagaggagtatataatcgatcaaggaaaaacattagatg |
8048070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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