View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16521_low_18 (Length: 498)
Name: NF16521_low_18
Description: NF16521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16521_low_18 |
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Alignment Details
Target: chr1 (Bit Score: 459; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 459; E-Value: 0
Query Start/End: Original strand, 1 - 483
Target Start/End: Complemental strand, 5161390 - 5160909
Alignment:
| Q |
1 |
tccattatgcattttttatgtaaaggtggatatgaatgtcacatagaagagccgagaggagggacagacagaatatttcattgtctagtttaaaaacaaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5161390 |
tccattatgcattttttatgtaaaggtggatatgaatgtcacatagaagagccgagaggagggacagacagaatatttcattgtctagtttaaaaacaaa |
5161291 |
T |
|
| Q |
101 |
ttgtacatatgaaacaattgcactcaagttcctgtaaatcatcttcgggacaagggacaaaggaagcacgctgtgtatagaatcgaactggacctgtcat |
200 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5161290 |
ttgtacatatgaaacaattgcacttaagttcctgtaaatcatcttcgggacaaggtacaaaggaagcacgctgtgtatagaatcgaactggacctgtcat |
5161191 |
T |
|
| Q |
201 |
tgatactgtaacacaagaaaagaaaccaatcaggcaaatcgatcttccaaacaatgaagatgcattttcattctgtctaatcaaaaattatttaatattc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||| |
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| T |
5161190 |
tgatactgtaacacaagaaaagaaaccaatcaggcaaatcgatcttccaaacaatgaagatgcattttcattctgtctaatc-aaaagtatttaatattc |
5161092 |
T |
|
| Q |
301 |
ctttctcagttaacatatatcaatctgttacaaacataaaacaactgatcctaatctacactaccttaagaaatcagtgaattcaatctaaatcaaacag |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5161091 |
ctttctcagttaacatatatcaatctgttacaaacataaaacaactgatcctaatctacactaccttaagaaatcagtgaattcaatctaaatcaaacag |
5160992 |
T |
|
| Q |
401 |
atttgttgcattcactacttcttgtatttttccaaattcaattagtcttaacaaattcattgcctataacctcaacccatctg |
483 |
Q |
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| T |
5160991 |
atttgttgcattcactacttcttgtatttttccaaattcaattagtcgtaacaaattcattgcctataacctcaacccatctg |
5160909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 178; E-Value: 8e-96
Query Start/End: Original strand, 68 - 438
Target Start/End: Complemental strand, 5158380 - 5158028
Alignment:
| Q |
68 |
acagaatatttcattgtctagtttaaaaacaaattgtacatatgaaacaattgcactcaagttcctgtaaatcatcttcgggacaagggacaaaggaagc |
167 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||| ||| |
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| T |
5158380 |
acagaatatttcattgtctagtataaaaacaaattgtacaaatgaaacaattgcactcaagttcctgtaaatcatcttcccgacaaggga-------agc |
5158288 |
T |
|
| Q |
168 |
acgctgtgtatagaatcgaactggacctgtcattgatactgtaacacaagaaaagaaaccaatcaggcaaatcgatcttccaaacaatgaagatgcattt |
267 |
Q |
| |
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|||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||| |
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| T |
5158287 |
acgctgtgtatagaatcggactggatctgtcattgatactgtaacacaagaaaagaaaccaatcaggcacatcgat------------gaagatgcattt |
5158200 |
T |
|
| Q |
268 |
tcattctgtctaatcaaaaattatttaatattcctttctcagttaacatatatcaatctgttacaaacataaaacaactgatcctaatctacactacctt |
367 |
Q |
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||||||||| ||||||| | | || |||||||||||| ||||||| |||||||||||||||||||||||||||||||||| | |||||||||||||| |
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| T |
5158199 |
gcattctgtcagatcaaaagt-acttgatattcctttctacgttaacacatatcaatctgttacaaacataaaacaactgatcattatctacactacctt |
5158101 |
T |
|
| Q |
368 |
aagaaatcagtgaattcaatctaaatcaaac-agatttgttgcattcactacttc-ttgtatttttccaaatt |
438 |
Q |
| |
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||||||||||||| |||| |||||||| ||| | ||||||| |||||||| ||| ||| ||||||||||||| |
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| T |
5158100 |
aagaaatcagtgagttcactctaaatccaactgggtttgttggattcactatttctttgcatttttccaaatt |
5158028 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 356 - 392
Target Start/End: Complemental strand, 44995209 - 44995173
Alignment:
| Q |
356 |
ctacactaccttaagaaatcagtgaattcaatctaaa |
392 |
Q |
| |
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|||||||||| ||||||||||||||||| |||||||| |
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| T |
44995209 |
ctacactaccataagaaatcagtgaatttaatctaaa |
44995173 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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