View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16521_low_19 (Length: 486)

Name: NF16521_low_19
Description: NF16521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16521_low_19
NF16521_low_19
[»] chr7 (3 HSPs)
chr7 (145-281)||(48018468-48018608)
chr7 (375-471)||(48018313-48018405)
chr7 (14-52)||(48018809-48018847)
[»] chr1 (1 HSPs)
chr1 (216-278)||(35408657-35408719)


Alignment Details
Target: chr7 (Bit Score: 100; Significance: 3e-49; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 145 - 281
Target Start/End: Complemental strand, 48018608 - 48018468
Alignment:
Q  145 gaagaaacattattcgatatgaagaaattcaaatnnnnnnnn----cattattctgaagcttttgataattgcactagttaggtcagtccggagctttat 240  Q
    ||||||||||||||||||||||||||||||||||            ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48018608 gaagaaacattattcgatatgaagaaattcaaattaaaaaaaaaaacattattctgaagcttttgataattgcactagttaggtcagtccggagctttat 48018509  T
Q  241 ggtgacagcagacccagattatttacttactggacggttag 281  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  48018508 ggtgacagcagacccagattatttacttactggacggttag 48018468  T

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Target: chr7; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 375 - 471
Target Start/End: Complemental strand, 48018405 - 48018313
Alignment:
Q  375 tattctctaattttactcgttaaaattcttgttgattaaacaatttaattataagcacgcagagtgacacatatcaagcaactggatgctacaacct 471  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    ||||||||||||||||||||||||||||||||||||||||||||||    
T  48018405 tattctctaattttactcgttaaaattcttgttgattaaacaattta----taagcacgcagagtgacacatatcaagcaactggatgctacaacct 48018313  T

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Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 14 - 52
Target Start/End: Complemental strand, 48018847 - 48018809
Alignment:
Q  14 ttattctaaactccaattttcaatttcagattatagtaa 52  Q
    |||||||||||||||||||||||||||||||||||||||    
T  48018847 ttattctaaactccaattttcaatttcagattatagtaa 48018809  T

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Target: chr1 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 216 - 278
Target Start/End: Original strand, 35408657 - 35408719
Alignment:
Q  216 tagttaggtcagtccggagctttatggtgacagcagacccagattatttacttactggacggt 278  Q
    |||| ||||||||||||||||||||||||||| ||||||||||||||| || || ||||||||    
T  35408657 tagtcaggtcagtccggagctttatggtgacaacagacccagattattcacgtattggacggt 35408719  T

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