View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16521_low_2 (Length: 915)
Name: NF16521_low_2
Description: NF16521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16521_low_2 |
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| [»] chr4 (1 HSPs) |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 781; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 781; E-Value: 0
Query Start/End: Original strand, 20 - 915
Target Start/End: Complemental strand, 40236310 - 40235404
Alignment:
| Q |
20 |
cccccatggtacccagcacccccatggagttgcattcaacctctatttcttcatcgctttcagctccttccacttccagcactacaatctctccttcttc |
119 |
Q |
| |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
40236310 |
cccccgtggtacccagcacccccatggagttgcattcaacctctatttcttcatcgctttcagctccttccacttccagcgctacaatctctccttcttc |
40236211 |
T |
|
| Q |
120 |
gttcaaggtttctccctctcccaagatcaacactcgcatcgcacgttcaggacacttatggagggtgggatgatacttacccccacatctgaagcacaac |
219 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40236210 |
gttcaaggtttctccctctcccaagatcaacactcgcatcgcacgttcaagacacttatggagggtgggatgatacttacccccacatctgaagcacaac |
40236111 |
T |
|
| Q |
220 |
cctttttctcgcctctcagccatctctttattgtggatgcttcgaattcccttccatttctctgtagatccagaattttcacccttctttgcagtagaaa |
319 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40236110 |
cctttttctcgcctctcagccatctctttgttgtggatgcttcaaattcccttccatttctctgtagatccagaattttcacccttctttgcagtagaaa |
40236011 |
T |
|
| Q |
320 |
acacagaggccgttgaatttgagttagatcccgtcgaaccagttttctgaaccgggttggcccgactcccatttccagatcgggtcgtgttctggtaact |
419 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
40236010 |
acacagaggccgttgaatttgagttagatcccgtcaaacccgttttctgaaccgggttggcccgactcccatttccagatcgggtcgtgttctggtaaat |
40235911 |
T |
|
| Q |
420 |
tgacccgctccgatccctcatttatgacccggcccaatcattacggcccactctctcattcgctcctttccttccataggatttgtcatcgtcatcttcc |
519 |
Q |
| |
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||||||||||||||||||||| | |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
40235910 |
tgacccgctccgatccctcatctgtgacccagcccaatcattacggcccactctctcattcgctcctttccttccataggatttgtcatcgtcgtcttcc |
40235811 |
T |
|
| Q |
520 |
tcctt-----------caacgtccttcgccatacgcatcatttgcatcctgctctgaggatttaatgcacgctcccttctccggatctggggttgtaccc |
608 |
Q |
| |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| || |
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| T |
40235810 |
tccttcaactcatcttcaacgtccttcgccatacgcatcatttgcatcctgctctgaggatttaatgtacgcacccttctccggatctggggttgtaacc |
40235711 |
T |
|
| Q |
609 |
ccctcctgaagtatcccaaatactgttcttcaggaagcttccccacctgagaagagagtaactcaaacgcttttacatactcttccacgcctcttttctg |
708 |
Q |
| |
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| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
40235710 |
cactcatgaagtatcccaaatactgttcttcaggaagcttccccacctgagaagagagtaactcaaacgcttccacatactcttccacgcctcttttctg |
40235611 |
T |
|
| Q |
709 |
acgtaaggtggacaattcttcgaacggattctctaatcgacgaccaccataacgagcgatcagcgctttcttcaatttctcccaagataattcatcctct |
808 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40235610 |
acgtaaggtggacaattcttcgaacggattctctaattgacgaccaccataacgagcgatcagcgctttcttcaatttctcccaagataattcatcctct |
40235511 |
T |
|
| Q |
809 |
gtttccatcaacagattaaaccaacgaattgttgttccttccatgctaaggcgtgcgagttttacgcgcatctcctccgacgtcgtctgtacgtcaaagt |
908 |
Q |
| |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
40235510 |
gtttccatcaacagattaaaccaatgaattgttgttccttccatgctaaggcgtgcgagttttacgcgcatctcctccgacgtcttctgtacgtcaaagt |
40235411 |
T |
|
| Q |
909 |
agatctc |
915 |
Q |
| |
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||||||| |
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| T |
40235410 |
agatctc |
40235404 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 761; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 761; E-Value: 0
Query Start/End: Original strand, 52 - 915
Target Start/End: Original strand, 46439302 - 46440176
Alignment:
| Q |
52 |
cattcaacctctatttcttcatcgctttcagctccttccacttccagcactacaatctctccttcttcgttcaaggtttctccctctcccaagatcaaca |
151 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46439302 |
cattcaacctctatttcttcatcgctttcagctccttccacttccagcgctacaatctctccttcttcgttcaaggtttctccctctcccaagatcaaca |
46439401 |
T |
|
| Q |
152 |
ctcgcatcgcacgttcaggacacttatggagggtgggatgatacttacccccacatctgaagcacaaccctttttctcgcctctcagccatctctttatt |
251 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
46439402 |
ctcgcatcgcacgttcaggacacttatggagggtgggatgatacttacccccacatctgaagcacaaccctttttctcgcctctcagccatctctttgtt |
46439501 |
T |
|
| Q |
252 |
gtggatgcttcgaattcccttccatttctctgtagatccagaattttcacccttctttgcagtagaaaacacagaggccgttgaatttgagttagatccc |
351 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46439502 |
gtggatgcttcgaattcccttccatttctctgtagatccagaattttcacccttctttgcagtagaaaacacagaggccgttgaatttgagttagatccc |
46439601 |
T |
|
| Q |
352 |
gtcgaaccagttttctgaaccgggttggcccgactcccatttccagatcgggtcgtgttctggtaacttgacccgctccgatccctcatttatgacccgg |
451 |
Q |
| |
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||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| | |||||| | |
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| T |
46439602 |
gtcaaacccgttttctgaaccgggttggcccgactcccatttccagatcgggtcgtgttctggtaaattgacccgctccgatccctcatctgtgacccag |
46439701 |
T |
|
| Q |
452 |
cccaatcattacggcccactctctcattcgctcctttccttccataggatttgtcatcgtcatcttcctc-----------cttcaacgtccttcgccat |
540 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||| |
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|
| T |
46439702 |
cccaatcattacggcccactctctcattcgctcctttccttccataggatttgtcatcgtcgtcttcctccttcaactcatcttcaacgtccttcgccat |
46439801 |
T |
|
| Q |
541 |
acgcatcatttgcatcctgctctgaggatttaatgcacgctcccttctccggatctggggttgtacccccctcctgaagtatcccaaatactgttcttca |
640 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| ||| ||| |||||||||||||||||||||||||| |
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|
| T |
46439802 |
acgcatcatttgcatcctgctctgaggatttaatgtacgcacccttctccggatctggggttgtaacccactcatgaagtatcccaaatactgttcttca |
46439901 |
T |
|
| Q |
641 |
ggaagcttccccacctgagaagagagtaactcaaacgcttttacatactcttccacgcctcttttctgacgtaaggtggacaattcttcgaacggattct |
740 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46439902 |
ggaagcttccccacctgagaagagagtaactcaaacgcttccacatactcttccacgcctcttttctgacgtaaggtggacaattcttcgaacggattct |
46440001 |
T |
|
| Q |
741 |
ctaatcgacgaccaccataacgagcgatcagcgctttcttcaatttctcccaagataattcatcctctgtttccatcaacagattaaaccaacgaattgt |
840 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
46440002 |
ctaattgacgaccaccataacgagcgatcagcgctttcttcaatttctcccaagataattcatcctctgtttccatcaacagattaaaccaatgaattgt |
46440101 |
T |
|
| Q |
841 |
tgttccttccatgctaaggcgtgcgagttttacgcgcatctcctccgacgtcgtctgtacgtcaaagtagatctc |
915 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
46440102 |
tgttccttccatgctaaggcgtgcgagttttacgcgcatctcctccgacgtcttctgtacgtcaaagtagatctc |
46440176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 722 - 816
Target Start/End: Complemental strand, 16355813 - 16355719
Alignment:
| Q |
722 |
aattcttcgaacggattctctaatcgacgaccaccataacgagcgatcagcgctttcttcaatttctcccaagataattcatcctctgtttccat |
816 |
Q |
| |
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||||||||||| |||||||| | || ||||| | ||||||||||||| ||| |||||||||||||||| |||| || |||||||||||||| |
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| T |
16355813 |
aattcttcgaatggattctccagtcttcgaccgtcgtaacgagcgatcaacgccttcttcaatttctccctggatagatcgtcctctgtttccat |
16355719 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 52; Significance: 2e-20; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 522 - 855
Target Start/End: Original strand, 28514591 - 28514921
Alignment:
| Q |
522 |
cttcaacgtccttcgccatacgcatcatttgcatcctgctctgaggatttaatgcacgctcccttctccggatctggggttgtacccccctcctgaagta |
621 |
Q |
| |
|
|||| ||||||||||| || |||||||| | ||| || ||| |||||||||| | ||| |||||| ||||||| |||| || || ||| ||||||| |
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| T |
28514591 |
cttccacgtccttcgcgattcgcatcatctccattctactcagaggatttaacgtacgaacccttc---ggatctgtggttttaatccactcatgaagta |
28514687 |
T |
|
| Q |
622 |
tcccaaatactgttcttcaggaagcttccccacctgagaagagagtaactcaaacgcttttacatactcttccacgcctcttttctgacgtaaggtggac |
721 |
Q |
| |
|
||||||||| ||||| || |||||| ||||||| ||||| || | ||| || || |||| ||| ||||||| || | | |||||||||| ||||| |
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| T |
28514688 |
tcccaaatattgttcctctggaagcctccccacttgagatgacaataattcgaaagcttcaacaaactcttctacactccccttctgacgtagagtggat |
28514787 |
T |
|
| Q |
722 |
aattcttcgaacggattctctaatcgacgaccaccataacgagcgatcagcgctttcttcaatttctcccaagataattcatcctctgtttccatcaaca |
821 |
Q |
| |
|
| ||| |||||||| |||||||| || | || || |||||||| || ||||| ||||| ||||||||| || | | ||||||||||||||||||| | |
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|
| T |
28514788 |
agttcctcgaacgggttctctaagcgccttccgccgtaacgagcaattagcgcgcgcttcagtttctcccatgagagtgcatcctctgtttccatcaaaa |
28514887 |
T |
|
| Q |
822 |
gattaaaccaacgaattgttgttccttccatgct |
855 |
Q |
| |
|
|||| |||||| |||| |||| || |||||||| |
|
|
| T |
28514888 |
gattgaaccaatgaatggttgaaccctccatgct |
28514921 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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