View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16521_low_22 (Length: 468)
Name: NF16521_low_22
Description: NF16521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16521_low_22 |
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Alignment Details
Target: chr2 (Bit Score: 409; Significance: 0; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 409; E-Value: 0
Query Start/End: Original strand, 12 - 452
Target Start/End: Complemental strand, 14560142 - 14559702
Alignment:
| Q |
12 |
ctctaaaaccaaaagtgaatcccacctcaacatttaagaaattccaatcaattaaactcctttcatgataataacgtatttcatatgtttgttgtgacaa |
111 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||| ||||||||| |||||||||||| |
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| T |
14560142 |
ctctaaaaccaaaagtgaatcccacctcaacacttaagaaatttcaatcaattaaactcctttcatgataataacgtgtttcatatgcttgttgtgacaa |
14560043 |
T |
|
| Q |
112 |
gcttttccctccttcaccaccacagttttgtatcagtggaggtccacacagctcttcattgcctataaatgaatcttcttgaaatgattaaatgtgtgtt |
211 |
Q |
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| T |
14560042 |
gcttttccctccttcaccaccacagttttgtgtcagtggaggtccacacaactcttcattgcctataaatgaatcttcttgaaatgattaaatgtgtgtt |
14559943 |
T |
|
| Q |
212 |
ccagtttgtatttttcccaccaagtgattacaagagaggttcataactgaaagaaatgataaccttgcaagctctaaaggaatctcatctcttaagttgt |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14559942 |
ccagtttgtatttttcccaccaagtgattacaagagaggttcataactgaaagaaatgataaccttgcaagctctaaaggaatctcatctcttaagttgt |
14559843 |
T |
|
| Q |
312 |
tattagacatgtccaatgactccagatgttttagatttcctaaagaagaaggaatgctacctgagaaagcattttgtgacaagttaagagcatggagtgc |
411 |
Q |
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| T |
14559842 |
tattagacatgtccaatgactccagatgttttagatttcctaaagaataaggaatgctatctgagaaagcattttgtgacaagttaagagcatggagtgc |
14559743 |
T |
|
| Q |
412 |
tgtgagactcataagctccattggtattggcccatcaaatt |
452 |
Q |
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| T |
14559742 |
tgtgagactcataagctccattggtattggcccatcaaatt |
14559702 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 133; E-Value: 6e-69
Query Start/End: Original strand, 24 - 264
Target Start/End: Complemental strand, 14569885 - 14569645
Alignment:
| Q |
24 |
aagtgaatcccacctcaacatttaagaaattccaatcaattaaactcctttcatgataataacgtatttcatatgtttgttgtgacaagcttttccctcc |
123 |
Q |
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|||||||| ||| ||||||| ||||||||||| |||||||| ||| ||| || ||| ||||| || ||||||||| ||||||| |||||||||||||||| |
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| T |
14569885 |
aagtgaattccaactcaacacttaagaaattctaatcaattgaacccctgtcgtgaaaataaggtgtttcatatgcttgttgttacaagcttttccctcc |
14569786 |
T |
|
| Q |
124 |
ttcaccaccacagttttgtatcagtggaggtccacacagctcttcattgcctataaatgaatcttcttgaaatgattaaatgtgtgttccagtttgtatt |
223 |
Q |
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||||||| |||| |||||| |||||||||||||||||| ||||| ||| ||||||| |||||||||||||||||||| ||| |||||||||| | ||||| |
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| T |
14569785 |
ttcaccaacacaattttgtgtcagtggaggtccacacaactctttattacctataagtgaatcttcttgaaatgattgaatttgtgttccaggtggtatt |
14569686 |
T |
|
| Q |
224 |
tttcccaccaagtgattacaagagaggttcataactgaaag |
264 |
Q |
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| T |
14569685 |
tttcccaccaaatgagtacaagagaggttcgtaactgaaag |
14569645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 149 - 450
Target Start/End: Complemental strand, 32549371 - 32549070
Alignment:
| Q |
149 |
ggaggtccacacagctcttcattgcctataaatgaatcttcttgaaatgattaaatgtgtgttccagtttgtatttttcccaccaagtgattacaagaga |
248 |
Q |
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||||||||| | ||| |||||||||| |||||||||||| |||||||||||| ||| ||||| |||||| ||||| ||||||||||||| ||| | || | |
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| T |
32549371 |
ggaggtccaaatagcccttcattgccaataaatgaatctgcttgaaatgattgaatctgtgtcccagttggtattcttcccaccaagtggttatatgaaa |
32549272 |
T |
|
| Q |
249 |
ggttcataactgaaagaaatgataaccttgcaagctctaaaggaatctcatctcttaagttgttattagacatgtccaatgactccagatgttttagatt |
348 |
Q |
| |
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||||||| |||| |||||||||||| |||||||||||| ||||||||| | |||||| || | |||| || || ||||| |||| | ||||| |
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| T |
32549271 |
ggttcatgactgcaagaaatgataaacttgcaagctctgtaggaatctctccacttaaggaattcatggacaaatctaaggactcgagatatcggagatt |
32549172 |
T |
|
| Q |
349 |
tcctaaagaagaaggaatgctacctgagaaagcattttgtgacaagttaagagcatggagtgctgtgagactcataagctccattggtattggcccatca |
448 |
Q |
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| T |
32549171 |
gcttaaagaagaaggtatcttacctgagaaagcattttgtgacaagttaagagcatgaagtgctgaaagattcataagttcttttggtattggtccttca |
32549072 |
T |
|
| Q |
449 |
aa |
450 |
Q |
| |
|
|| |
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|
| T |
32549071 |
aa |
32549070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 305 - 443
Target Start/End: Complemental strand, 14569647 - 14569504
Alignment:
| Q |
305 |
aagttgttattagacatgtccaatgactccagatgttttagatttcctaaagaagaaggaatgctacctgag-aaagcattttgtgacaag-------tt |
396 |
Q |
| |
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|||| |||||||||| |||||||||||| ||||||||||||| |||||||||||| ||| ||||||||| |||||||| ||||||||| || |
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| T |
14569647 |
aagtagttattagaccagtccaatgactcaagatgttttagatatcctaaagaaga---aatactacctgagaaaagcattgtgtgacaagttaagactt |
14569551 |
T |
|
| Q |
397 |
aagagcatggagtgctgtgagactcataagctccattggtattggcc |
443 |
Q |
| |
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|||||||||||||||||||||||||||||||||| ||| |||||||| |
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| T |
14569550 |
aagagcatggagtgctgtgagactcataagctcctttgttattggcc |
14569504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 16 - 63
Target Start/End: Complemental strand, 32549498 - 32549451
Alignment:
| Q |
16 |
aaaaccaaaagtgaatcccacctcaacatttaagaaattccaatcaat |
63 |
Q |
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|||||||||||||||||||| |||| || | ||||||||||||||||| |
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| T |
32549498 |
aaaaccaaaagtgaatcccaactcagcactcaagaaattccaatcaat |
32549451 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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