View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16521_low_27 (Length: 454)

Name: NF16521_low_27
Description: NF16521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16521_low_27
NF16521_low_27
[»] chr1 (3 HSPs)
chr1 (202-276)||(24629715-24629789)
chr1 (368-416)||(24629797-24629845)
chr1 (1-42)||(14291950-14291991)
[»] chr4 (2 HSPs)
chr4 (202-276)||(11031949-11032016)
chr4 (369-416)||(11031820-11031867)
[»] chr2 (1 HSPs)
chr2 (1-42)||(23879582-23879623)
[»] chr8 (1 HSPs)
chr8 (121-173)||(16187317-16187369)


Alignment Details
Target: chr1 (Bit Score: 75; Significance: 2e-34; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 202 - 276
Target Start/End: Original strand, 24629715 - 24629789
Alignment:
Q  202 aacagacgggcgctcatgaattagggtttggtaaaatttaagagtgaatttggttgcagagtgtatatgcgtgtc 276  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24629715 aacagacgggcgctcatgaattagggtttggtaaaatttaagagtgaatttggttgcagagtgtatatgcgtgtc 24629789  T

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Target: chr1; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 368 - 416
Target Start/End: Original strand, 24629797 - 24629845
Alignment:
Q  368 aaaatcataatgatcctttctatgccaattaaagttgaatttgttggta 416  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||    
T  24629797 aaaatcataatgatcctttctatgccaattaaagttgactttgttggta 24629845  T

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Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 14291991 - 14291950
Alignment:
Q  1 atttagattataatcttttggcaacatgttgtggaggaattc 42  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  14291991 atttagattataatcttttggcaacatgttgtggaggaattc 14291950  T

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Target: chr4 (Bit Score: 49; Significance: 7e-19; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 202 - 276
Target Start/End: Complemental strand, 11032016 - 11031949
Alignment:
Q  202 aacagacgggcgctcatgaattagggtttggtaaaatttaagagtgaatttggttgcagagtgtatatgcgtgtc 276  Q
    ||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||    
T  11032016 aacagacgggcgctcatgaattagggtttggtaa-------gagtgaatttggttgcagagtgtatatgcgtgtc 11031949  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 369 - 416
Target Start/End: Complemental strand, 11031867 - 11031820
Alignment:
Q  369 aaatcataatgatcctttctatgccaattaaagttgaatttgttggta 416  Q
    |||||| ||||||| |||||||||||||||||||||| ||||||||||    
T  11031867 aaatcagaatgatcttttctatgccaattaaagttgactttgttggta 11031820  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 23879582 - 23879623
Alignment:
Q  1 atttagattataatcttttggcaacatgttgtggaggaattc 42  Q
    |||||||||||||| |||||||||||||||||||||||||||    
T  23879582 atttagattataatattttggcaacatgttgtggaggaattc 23879623  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 121 - 173
Target Start/End: Complemental strand, 16187369 - 16187317
Alignment:
Q  121 tgttagcaagaatgtccgcacaatgatttcctttcctgtatatatgagtaaca 173  Q
    ||||||||||| |||| ||||| |||||||||| ||| |||||||||||||||    
T  16187369 tgttagcaagactgtctgcacattgatttccttccctatatatatgagtaaca 16187317  T

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