View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16521_low_28 (Length: 447)
Name: NF16521_low_28
Description: NF16521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16521_low_28 |
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Alignment Details
Target: chr4 (Bit Score: 389; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 17 - 430
Target Start/End: Complemental strand, 43815727 - 43815314
Alignment:
| Q |
17 |
caaaggacaactgacagagaaggcagatatatatgcttttggtattttggttactgaaattgtttgtgggaaaaataacggtgtttttccacaaggttca |
116 |
Q |
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| T |
43815727 |
caaaggacaactgacagagaaggcagatatatatgcttttggtattttggttactgaaattgtttgtgggaaaaataacggtgtttttccacaaggttca |
43815628 |
T |
|
| Q |
117 |
aatttggtactccataatgtaagatttacactcactcaagccttaaataacggtgttttgtcattaatgaattttgttagcagctaataaaatgttcatg |
216 |
Q |
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| T |
43815627 |
aatttggtactccataatgtaagatttacactcactcaagccttaaataacggtgttttgtcgttaatgaattttgttagcagctaataaaatgttcatg |
43815528 |
T |
|
| Q |
217 |
tcatcacttgatcaggtatggaagaattacaaggcaaacaatatcacaacatcaattgatcctgctcttcatggaaaatttgaggtagaagaagcatcaa |
316 |
Q |
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| T |
43815527 |
tcatcacttgatcaggtatggaagaattacaaggcaaacaatatcacaacatcaattgatcctgctcttcatggaaaatttgaggtagaagaagcatcaa |
43815428 |
T |
|
| Q |
317 |
atgctctacaagctgcacttctttgtacacaatcatctcctacccaaagaccatccatgtcagaagtagttcaaatgctaacnnnnnnngactacaaaat |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
43815427 |
atgctctacaagctgcacttctttgtacacaatcatctcctacccaaagaccatccatgtcagaagtagttcaaatgctaacaaaaaaagactacaaaat |
43815328 |
T |
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| Q |
417 |
tcccaccccaaaac |
430 |
Q |
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| T |
43815327 |
tcccaccccaaaac |
43815314 |
T |
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