View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16521_low_31 (Length: 424)
Name: NF16521_low_31
Description: NF16521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16521_low_31 |
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Alignment Details
Target: chr8 (Bit Score: 310; Significance: 1e-174; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 15 - 408
Target Start/End: Original strand, 38080965 - 38081366
Alignment:
| Q |
15 |
aacatgatccttgaatacaagtgaagtgaagtaatggttcggttatatatataggaggaatttgggataactcagttcttatgtgcgtgcctaaaactta |
114 |
Q |
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| T |
38080965 |
aacatgatccttgaatacaagtgaagtgaagtaatgtttcggttatata----ggaggaatttgggataactcagttcttatgtgcgtgcctaaaactta |
38081060 |
T |
|
| Q |
115 |
tcccatataggctcctttatttgttgttatattttgatatgttggttagcatatgtacctaccaacatttgattgtgtcttttctcctgccggcttattt |
214 |
Q |
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| T |
38081061 |
tcccat----gctcctttatttgttgttatattttgatatgttggttagcatatgtacctaccaacatttgattgtgtcttttctcctgccggcttattt |
38081156 |
T |
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| Q |
215 |
tagagcattgagcaggccatgatcttaaacatgtgaaataatattcactcg------------tttgtgtttaattcc----atatagttttggttttct |
298 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||| |
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| T |
38081157 |
tagagcattgagcaggccatgatcttaaacatgtgaaataatattcactcgtgtcttaagtattttgtgtttaattccatatatatagttttggttttct |
38081256 |
T |
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| Q |
299 |
gtatttgtaattcgcacaacatctctaatggattgtttataacttcaaataacattgaaaatcagaaattagattattaatatagaaatgatgtgcctgt |
398 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38081257 |
gtatttgtaattcgcacaacatctctaatggattgtgtataacttcaaataacattgaaaatcagaaattagattattaatatagaaatgatgtgcctgt |
38081356 |
T |
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| Q |
399 |
cgggaaaaac |
408 |
Q |
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| T |
38081357 |
cgggaaaaac |
38081366 |
T |
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