View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16521_low_32 (Length: 420)
Name: NF16521_low_32
Description: NF16521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16521_low_32 |
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Alignment Details
Target: chr8 (Bit Score: 314; Significance: 1e-177; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 31 - 405
Target Start/End: Original strand, 3689045 - 3689431
Alignment:
| Q |
31 |
atatatatatttaattagatcaggtaatcaaaatgataataaggatgatggtatagttcataacttcatatcagatttcataaaaaagaattatcaatgg |
130 |
Q |
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| T |
3689045 |
atatatatatttaatttgatcaggtaatcaaaatgataataaggatgatggtatagttcataacttcatatcagatttcataaaaaagaattatcaatgg |
3689144 |
T |
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| Q |
131 |
ccagatataattaatgtgcctagctttcannnnnnnngtgttcgtcttgttatatacatatcttgatttgaaacaaaaattgaactcacttgatacaagt |
230 |
Q |
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| T |
3689145 |
ccagatataattaatgtgcctagctttcattttttttgtgttcgtcttgttatatacatatcttgatttgaaacaaaaattgaactcactagatacaagt |
3689244 |
T |
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| Q |
231 |
tgatgaaattatttattttggacatgaataccaatatga------------aattatctatcaatgtcaattttttctcagatggagggagcaccgaaag |
318 |
Q |
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| T |
3689245 |
tgatgaaattatttattttggacatgaataccaatatgaataaatgaatgaaattatctatcaatgtcaattttttctcagatggagggagcaccgaaag |
3689344 |
T |
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| Q |
319 |
ccgcagccgcagccattcagctaattcatttgcagaaccaactcatttgaaggaaacaatccaaactcaaccaaatggcataaaact |
405 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3689345 |
ccgcagccgcagccattcagctaattcatttgcagaaccaactcatttgaaggaaacaatccaaactcaaccaaatggcataaaact |
3689431 |
T |
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