View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16521_low_34 (Length: 403)
Name: NF16521_low_34
Description: NF16521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16521_low_34 |
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Alignment Details
Target: chr3 (Bit Score: 170; Significance: 4e-91; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 29 - 242
Target Start/End: Complemental strand, 36726691 - 36726478
Alignment:
| Q |
29 |
ggattttctactttgctttggtgaaaatacatgtttgggaaattccttgcatgctgagttgtctggagccatgagagcaatagagattgcaaactcacat |
128 |
Q |
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| T |
36726691 |
ggattttctactttgctttggtgaaaatacaggtttgggaaactccttgcatgtcgagttgtctggagccatgagaccaatagagattgcaaactcacat |
36726592 |
T |
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| Q |
129 |
caatggtcgaatttatggctggaagtagattcaaaattggtgatcaaagccttcaaaaatgtttctttagttccttggaagcttagaaacagatggttaa |
228 |
Q |
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| T |
36726591 |
cagcggtcgaaattatggctggaagcagattcagaattggtgatcaaagccttaaaaaatgtttctttagttccttggaagcttagaaacagatggttaa |
36726492 |
T |
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| Q |
229 |
actgcgttcaattg |
242 |
Q |
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| T |
36726491 |
actgcgttcaattg |
36726478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 133; Significance: 5e-69; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 252 - 392
Target Start/End: Complemental strand, 25276704 - 25276564
Alignment:
| Q |
252 |
gccttctggccactactcactactgagttggcaacttggaaaaacaaagtaaatgccaacataagacaatggttctccaattgcactcgtacgaagcttt |
351 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25276704 |
gccttctggctactactcactactgagttggcaacttggaaaaacaaagtaaatgccaacataagacaatggttctccaattgcactcgtacgaagcttt |
25276605 |
T |
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| Q |
352 |
tactccatcaagtcacacatcacaaatacccatatagagaa |
392 |
Q |
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| T |
25276604 |
tactccatcaagtcacacatcacaaatacccttatagagaa |
25276564 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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