View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16521_low_35 (Length: 395)
Name: NF16521_low_35
Description: NF16521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16521_low_35 |
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Alignment Details
Target: chr5 (Bit Score: 354; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 11 - 384
Target Start/End: Complemental strand, 27929584 - 27929211
Alignment:
| Q |
11 |
taaaataattggaaaaaattcgaccatgaaaaccacttacaaagttggacaacttggttggtgtaaaagggttgaaatcaaatggaacttgagccacgaa |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27929584 |
taaaataattggaaaaaattcgaccatgaaaaccacttacaaagttggacaacttggttggtgtaaaagggttgaaatcaaatggaacttgagccacgaa |
27929485 |
T |
|
| Q |
111 |
gagctccagataatgaagtaaaaagaggccacaatcaaatgagttttcctgctgtggtacctgtcaaggacattcaatcacaacattagtaaaaacacaa |
210 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
27929484 |
gagctccagataatgaagcaaaaagaggccacaatcaaatgagttttcctgctgtggtatctgtcaaggacattcaatcacaacattagtaaaaacacaa |
27929385 |
T |
|
| Q |
211 |
tgaaatggagaaaatagaaagttgttcgatgataactcaattaatcatcagccagagataggcgagaaataaattcaaaaagcgacaaagtttaggccaa |
310 |
Q |
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|||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27929384 |
tgaattggagaaaatagaaagttgttcgatgataactcaactaatcatcagccagagataggcgagaaataaattcaaaaagcgacaaagtttaggccaa |
27929285 |
T |
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| Q |
311 |
ttaacgggacttgcaaaaagaaaacaattgagcaaaaataaatgtttaaagaaagaataattgtctctgatatt |
384 |
Q |
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| T |
27929284 |
ataacgggacttgcaaaaagaaaacaattgagcaaaaataaatgtttaaagaaagaataattgtctctgatatt |
27929211 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 12 - 384
Target Start/End: Original strand, 28082254 - 28082626
Alignment:
| Q |
12 |
aaaataattggaaaaaattcgaccatgaaaaccacttacaaagttggacaacttggttggtgtaaaagggttgaaatcaaatggaacttgagccacgaag |
111 |
Q |
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| T |
28082254 |
aaaataattggaaaaaagttaaccatgaaaaccacttacaaagttggaacaattggttagtctcagagggttgaaatcaaatggaacttgagccacgaag |
28082353 |
T |
|
| Q |
112 |
agctccagataatgaagtaaaaagaggccacaatcaaatgagttttcctgctgtggtacctgtcaaggacattcaatcacaacattagtaaaaacacaat |
211 |
Q |
| |
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||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||| |
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| T |
28082354 |
agctctagataatgaagcaaaaagaggccacaatcaaatgagttttcctgctgtggtacctgtcaaggacattcagtcacaacattagtaaaagcacaat |
28082453 |
T |
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| Q |
212 |
gaaatggagaaaatagaaagttgttcgatgataactcaattaatcatcagccagagataggcgagaaataaattcaaaaagcgacaaagtttaggccaat |
311 |
Q |
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| T |
28082454 |
caaatggagaaaatagaaagttgttcgatgataactcaactaatcatcagccagagataggcgagaaataaattcaaaaagcgacaaagtttaggccaaa |
28082553 |
T |
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| Q |
312 |
taacgggacttgcaaaaagaaaacaattgagcaaaaataaatgtttaaagaaagaataattgtctctgatatt |
384 |
Q |
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||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
28082554 |
taatgggacttgcaaaaagaaaacaattgagcaaaaagaaatgtttaaagaaagaataattgtctctgatatt |
28082626 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 23 - 291
Target Start/End: Complemental strand, 27935603 - 27935335
Alignment:
| Q |
23 |
aaaaaattcgaccatgaaaaccacttacaaagttggacaacttggttggtgtaaaagggttgaaatcaaatggaacttgagccacgaagagctccagata |
122 |
Q |
| |
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|||||| || ||||||||||||||||||||||||||| |||||| || || | ||||||||||||||| |||||| || | | | |||| |||| ||||| |
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| T |
27935603 |
aaaaaagtcaaccatgaaaaccacttacaaagttggagaacttgattagtatcaaagggttgaaatcagatggaatttcatctaggaagcgctctagata |
27935504 |
T |
|
| Q |
123 |
atgaagtaaaaagaggccacaatcaaatgagttttcctgctgtggtacctgtcaaggacattcaatcacaacattagtaaaaacacaatgaaatggagaa |
222 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||| |||||||||| |
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| T |
27935503 |
atgaagtaaaaagaggccacaatcaaatttgttttcctgctgtggtacctgtcaaggacattcagtcacaacattagtaaaagcacaatcaaatggagaa |
27935404 |
T |
|
| Q |
223 |
aatagaaagttgttcgatgataactcaattaatcatcagccagagataggcgagaaataaattcaaaaa |
291 |
Q |
| |
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|||||||||||||||||||||||||||| ||||||||||||||||||||| ||| |||||||||||||| |
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| T |
27935403 |
aatagaaagttgttcgatgataactcaactaatcatcagccagagataggagaggaataaattcaaaaa |
27935335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 38 - 176
Target Start/End: Complemental strand, 46163596 - 46163458
Alignment:
| Q |
38 |
gaaaaccacttacaaagttggacaacttggttggtgtaaaagggttgaaatcaaatggaacttgagccacgaagagctccagataatgaagtaaaaagag |
137 |
Q |
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|||||| ||||||||| ||||| ||||||||| | | || || |||||| || ||| ||| ||| | ||||||||| || || || || | |||||| |
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| T |
46163596 |
gaaaacgacttacaaaattggaaaacttggttactttgaatggattgaaagtaagaggagcttcagcaaggaagagctctaggtagtgcagcagaaagag |
46163497 |
T |
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| Q |
138 |
gccacaatcaaatgagttttcctgctgtggtacctgtca |
176 |
Q |
| |
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|||||||||| |||||||||| |||||||| | |||||| |
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| T |
46163496 |
gccacaatcatatgagttttcttgctgtggcaactgtca |
46163458 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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