View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16521_low_36 (Length: 392)
Name: NF16521_low_36
Description: NF16521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16521_low_36 |
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Alignment Details
Target: chr8 (Bit Score: 333; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 15 - 377
Target Start/End: Original strand, 35796680 - 35797039
Alignment:
| Q |
15 |
aaagaaagtgtaatagagagaagatgaaatgttattcaaatattattcatttttgtagtttattatctctttgttagcaagtaagatcaacacaaaatag |
114 |
Q |
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| T |
35796680 |
aaagaaagtgtaatagagagaagatgaaatgttattcaaatattattcattattgtagtttattatctctttgttagcaagtaagatcaacacaaaatag |
35796779 |
T |
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| Q |
115 |
aacaaaaaatattttcacaaatacaccgataatacattcatccaagcaactcatatacaattacaaatagtactcgttttgaattcatgcaaaaataata |
214 |
Q |
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| T |
35796780 |
aacaaaaaatattttcacaaatacaccgataatacattcatccaagcaactcatatacaattacaaatagtactcgttttgaattcatgcaaaaataata |
35796879 |
T |
|
| Q |
215 |
tcatttatccatgtcttgaattttgtttgtaagttggtgtcatcgttggtcaagtaggattcgatgtcaagtctcttggaagttcaatttgtttttgaat |
314 |
Q |
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|||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35796880 |
tcatttattcatgtcttgaattttgtttgtaagttggtgtcgtcgttggtcaagtaggattcgatgtcaagtctcttggaagttcaatttgtttttgaat |
35796979 |
T |
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| Q |
315 |
aattaatgtaataaaataattgcaaagaaagacagagataacaacagattcacatgagctact |
377 |
Q |
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|| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
35796980 |
aagtaatgtaataaaataattgcaaagaaagacagagat---aacagattcacatgagctact |
35797039 |
T |
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