View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16521_low_39 (Length: 386)
Name: NF16521_low_39
Description: NF16521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16521_low_39 |
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Alignment Details
Target: chr6 (Bit Score: 102; Significance: 1e-50; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 139 - 249
Target Start/End: Original strand, 33393318 - 33393430
Alignment:
| Q |
139 |
gtctattcaaaatataaaactatgctctttttctttttacttgaagtcacaaatacacgctcgtgatatttcccgaagaataattcgggac--atatagc |
236 |
Q |
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| T |
33393318 |
gtctattcaaaatataaaactatgctctttttctttttacttgaagtcacaaatacacgctcgtgatatttcccgaagaataattcgggacatatatagc |
33393417 |
T |
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| Q |
237 |
attgctctgatag |
249 |
Q |
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| T |
33393418 |
attgctctgatag |
33393430 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 326 - 375
Target Start/End: Original strand, 33393507 - 33393553
Alignment:
| Q |
326 |
caacaaaacactataattaaacataacaaaaacgaaaccacgtgatgatg |
375 |
Q |
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| T |
33393507 |
caacaaaacactataattaaacat---aaaaacgaaaccacgtgatgatg |
33393553 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 52
Target Start/End: Original strand, 33393197 - 33393231
Alignment:
| Q |
18 |
gtatctagtttaaaattttaatcaattacatcaac |
52 |
Q |
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| T |
33393197 |
gtatctagtttaaaattttaatcaattacatcaac |
33393231 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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