View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16521_low_40 (Length: 382)
Name: NF16521_low_40
Description: NF16521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16521_low_40 |
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Alignment Details
Target: chr3 (Bit Score: 367; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 1 - 371
Target Start/End: Complemental strand, 31810608 - 31810238
Alignment:
| Q |
1 |
gcaatgatgtatcaatagcatatcctgaatctttcttctcagctactaattcttttgaattagccactgaaagtttctgcctaactacttcatcaaggaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31810608 |
gcaatgatgtatcaatagcatatcctgaatctttcttctcagctactaattcttttgaattagccactgaaagtttctgcctaactacttcatcaaggaa |
31810509 |
T |
|
| Q |
101 |
atcaacatctgcaccagcatcaagcaagagcttaacaatctcaaatttggatttagagccaccagcaacagcacaatgtaatgcagtgacattttcacta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31810508 |
atcaacatctgcaccagcatcaagcaagagcttaacaatctcaaatttggatttagagccaccagcaacagcacaatgtaatgcagtgacattttcacta |
31810409 |
T |
|
| Q |
201 |
ccaattgccatgttcacattaaccatgtttgtttcaatgatatatttgaccaccctaatgcttccaaacaaagaagcaatcataaggggtgtcctctttt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
31810408 |
ccaattgccatgttcacattaaccatgtttgtttcaatgatatatttgaccaccctaatgcttccaaacaaagaagcaatcataaggggtgttctctttt |
31810309 |
T |
|
| Q |
301 |
cataacacattttctttgatcctatttttctacagtaccaaaaccctgcctcatttacatcatagcccttt |
371 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31810308 |
cataacacattttctttgatcctatttttctacagtaccaaaaccctgcctcatttacatcatagcccttt |
31810238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 259 - 322
Target Start/End: Complemental strand, 25817891 - 25817828
Alignment:
| Q |
259 |
tgcttccaaacaaagaagcaatcataaggggtgtcctcttttcataacacattttctttgatcc |
322 |
Q |
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||||||||||||| | |||||||||||| || ||||| | |||||||| ||||| ||||||||| |
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| T |
25817891 |
tgcttccaaacaaggcagcaatcataagaggggtcctttcttcataactcatttcctttgatcc |
25817828 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 248 - 361
Target Start/End: Complemental strand, 35643265 - 35643152
Alignment:
| Q |
248 |
gaccaccctaatgcttccaaacaaagaagcaatcataaggggtgtcctcttttcataacacattttctttgatcctatttttctacagtaccaaaaccct |
347 |
Q |
| |
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|||||| ||| |||||||||||| |||||||||||||| || ||||||||||| | ||| ||||| ||||| ||| |||||| |||||||| ||| |
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| T |
35643265 |
gaccactctagtgcttccaaacatggaagcaatcataagaggagtcctcttttcggattccatcttcttcgatccaattcttctaccataccaaaagcct |
35643166 |
T |
|
| Q |
348 |
gcctcatttacatc |
361 |
Q |
| |
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||||||| ||||| |
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| T |
35643165 |
tcctcattcacatc |
35643152 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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