View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16521_low_41 (Length: 378)
Name: NF16521_low_41
Description: NF16521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16521_low_41 |
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Alignment Details
Target: chr8 (Bit Score: 246; Significance: 1e-136; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 23 - 362
Target Start/End: Complemental strand, 21546336 - 21545996
Alignment:
| Q |
23 |
atcattattgagtgaatgtagaaggccattattgta--acctttg-tcttacaatcgatttcctataattgnnnnnnnnnnnnnnncaaatggcatgtct |
119 |
Q |
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| T |
21546336 |
atcattattgagtgaatgtggaaggccattattgtataacctttgatcttgcaatcgattttctataattgttttttttttttt--caaatggcatgtgt |
21546239 |
T |
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| Q |
120 |
catgctgttttggtgtcacaattgataagagaaattgttccttcactattgattttcactaggttgatgaaagttacatgaactctaaactcatgattgt |
219 |
Q |
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| T |
21546238 |
catgctgttttggtgtctcaattgataagagaaattgttccttcactattgattttcactaggttgatgaaagttacatgaactctaaactcatgattgt |
21546139 |
T |
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| Q |
220 |
cggaggatgatgagtagctctgcaattgtttacctatttgatgcatacatggagaaatagccacaaataagtatgagtactattttttggttgattataa |
319 |
Q |
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| T |
21546138 |
cggaggatgatgagtagctctgcaattgtttacctatttgatgcatacatggagaagtagccacaaatatgtatgagtactattttttggttgattataa |
21546039 |
T |
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| Q |
320 |
catgattaaatgaatattatagactcttatgttatcatgttat |
362 |
Q |
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| T |
21546038 |
catgattaaatgaatattatagactcttatgttatcatgttat |
21545996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 106 - 180
Target Start/End: Original strand, 7498563 - 7498637
Alignment:
| Q |
106 |
caaatggcatgtctcatgctgttttggtgtcacaattgataagagaaattgttccttcactattgattttcacta |
180 |
Q |
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| T |
7498563 |
caaatggcatgtgtcatgctgttttggtgtcacaattgataagagaaattgtttctttgctattcattttcacta |
7498637 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 73; Significance: 3e-33; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 106 - 349
Target Start/End: Original strand, 46885136 - 46885351
Alignment:
| Q |
106 |
caaatggcatgtctcatgctgttttggtgtcacaattgataagagaaattgttccttcactattgattttcactaggttgatgaaagttacatgaactct |
205 |
Q |
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| T |
46885136 |
caaatggcatgtgtcatgtagttttggtgtcacaattgataagagaaattg-------------gcttttcactatgttgatgaaagttgcatgaactct |
46885222 |
T |
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| Q |
206 |
aaactcatgattgtcggaggatgatgagtagctctgcaattgtttacctatttgatgcatacatggagaaatagccacaaataagtatgagtactatttt |
305 |
Q |
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| T |
46885223 |
aaagtcatgattgccggaggatgatgagcagctctgcaattgtttac----ttgatgttt-----------tagactcaaataagtatgggtattatttt |
46885307 |
T |
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| Q |
306 |
ttggttgattataacatgattaaatgaatattatagactcttat |
349 |
Q |
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| T |
46885308 |
ttggttgattataacatgattaaatgaatgtttaagactcttat |
46885351 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 106 - 180
Target Start/End: Complemental strand, 37685198 - 37685124
Alignment:
| Q |
106 |
caaatggcatgtctcatgctgttttggtgtcacaattgataagagaaattgttccttcactattgattttcacta |
180 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||| |||||||||| ||| ||||| |||||||||| |
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| T |
37685198 |
caaatggcatgtgtcatgctgttttggtgtcacaattgataaaagaaattgtttctttgctattcattttcacta |
37685124 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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