View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16521_low_43 (Length: 371)
Name: NF16521_low_43
Description: NF16521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16521_low_43 |
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Alignment Details
Target: chr3 (Bit Score: 153; Significance: 5e-81; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 136 - 361
Target Start/End: Complemental strand, 33861992 - 33861770
Alignment:
| Q |
136 |
gatatgtcacctgctaaaattttggtcaagatctgccgcgacaaaattgtccctcgatcaaacaaaagatcaaatcattattttannnnnnngacataaa |
235 |
Q |
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| T |
33861992 |
gatatgtcaccctctaaaattttggtcaagatctgccacgacaaaattgtccctcgatcaaacaaaagaacaaatcattatttt---tttttgacataaa |
33861896 |
T |
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| Q |
236 |
caactcattatttatcttctatacaatatataaaatacttcatccataatgaaatatcagcaaaacggatagttgaaaaatcaacatataaaaatttagt |
335 |
Q |
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|||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||| |
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| T |
33861895 |
caactcattatttatcttttatactatatataaaatacttcatccataatgaaatatcaacaaaacggatagttgaaaaatcaacgtataaaaatttagt |
33861796 |
T |
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| Q |
336 |
ctccagacatcaacttctcacctatg |
361 |
Q |
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|| || ||||||||||||||| |||| |
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| T |
33861795 |
ctacatacatcaacttctcacttatg |
33861770 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 24 - 112
Target Start/End: Complemental strand, 33862099 - 33862011
Alignment:
| Q |
24 |
gctcctccaaccacaaccagcaactctcctccatcaccatcacaattggaccttttgtttagagggtggcacaccttgtgcttgctgtc |
112 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
33862099 |
gctcctccaaccacaaccaacaactctcctccatcaccatcacaattggaccgtttgtttagagggtggcacaccttgtgcttgctgtc |
33862011 |
T |
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