View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16521_low_44 (Length: 364)
Name: NF16521_low_44
Description: NF16521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16521_low_44 |
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Alignment Details
Target: chr8 (Bit Score: 317; Significance: 1e-179; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 18 - 354
Target Start/End: Complemental strand, 11612993 - 11612657
Alignment:
| Q |
18 |
caattatacatatgaatgtttgacatctacatctaaatgtgaagagcaagcaaaggaaaaagaaaaggaccttaagactaaaaggcaaaccaaacatgca |
117 |
Q |
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| T |
11612993 |
caattatacatatgaatgtttgacatctacatctaaatgtgaagagcaagcaaaggaaaaagaaaaggaccttaagactaaaaggcaaaccaaacatgca |
11612894 |
T |
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| Q |
118 |
gaagaaactagatcaatggaaataatttacaaaatcaattagagtgaggacaaaagcagaagctagattacatcataccaaactatatagaaacatgaaa |
217 |
Q |
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| T |
11612893 |
gaagaaactagatcaatggaaatactttacaaaatcaattagagtgaggacaaaagcagaagctagattacatcataccaaactatatagaaacatgaaa |
11612794 |
T |
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| Q |
218 |
attaaaaaaggcttcatgttgaagataaagaccagctgaactgtaacaggtccactctcacagtcataccaaccaaccataacaaaatctttaacattaa |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
11612793 |
attaaaaaaggcttcatgttgaagataaagaccagctgaactgtaacaggtccactctcacagtcacaccaaccaaccataacaaaatctttaacattaa |
11612694 |
T |
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| Q |
318 |
gcaatttctaagataacccttgtaagcttatcctttg |
354 |
Q |
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||||||||||| |||||||| ||||||||||||||| |
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| T |
11612693 |
gcaatttctaatgtaacccttttaagcttatcctttg |
11612657 |
T |
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