View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16521_low_47 (Length: 362)
Name: NF16521_low_47
Description: NF16521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16521_low_47 |
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Alignment Details
Target: chr7 (Bit Score: 223; Significance: 1e-123; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 9 - 343
Target Start/End: Complemental strand, 46522630 - 46522295
Alignment:
| Q |
9 |
agcataggaaataagtaatcacatttatgaattcatcaagaagttctgagcttatctgcaaatgaaataatcttgctgctatgtctatttcccggttctt |
108 |
Q |
| |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
46522630 |
agcagaggaaataagtaatcacatttatgaattcatcaagaagttctgagcttatctacaaatgaaataatcttgctgctatgtctatttcccggttctt |
46522531 |
T |
|
| Q |
109 |
agtagttgcgtgtgttgtatttagaacaattgttctcttgtaaccaaccatttaaatctaaatactggatgtatctttccggctcaaatagctctccaca |
208 |
Q |
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||||||||||||||||||||||||||||||||||||| ||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46522530 |
agtagttgcgtgtgttgtatttagaacaattgttctcctgt----aaccatttaactctaaatactggatgtatctttccggctcaaatagctctccaca |
46522435 |
T |
|
| Q |
209 |
agggtcattaataataatgtacctaataatacacaacatacataatcccc-----cnnnnnnnnnnnnnnnngttactatataatcccattgttgcagca |
303 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||| ||||| ||||||||||||||||| |||| |
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| T |
46522434 |
agggtcattaataataatgtatctaataatacacaacatacataatccccttttttttccttttttttttttgttacgatataatcccattgttgtagca |
46522335 |
T |
|
| Q |
304 |
agtattttgaattaaacggggtcaatgaaatttggtgcat |
343 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
46522334 |
agtattttgaattaaacggggtcaatgaaatttggtgcat |
46522295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 9 - 343
Target Start/End: Complemental strand, 46530063 - 46529732
Alignment:
| Q |
9 |
agcataggaaataagtaatcacatttatgaattcatcaagaagttctgagcttatctgcaaatgaaataatcttgctgctatgtctatttcccggttctt |
108 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||| |
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| T |
46530063 |
agcagaggaaataagtaatcacatttatgaattcatcaagaagttctgagcttatctacaaatgaaataatcttgctgctatgtctatttccgggttctt |
46529964 |
T |
|
| Q |
109 |
agtagttgcgtgtgttgtatttagaacaattgttctcttgtaaccaaccatttaaatctaaatactggatgtatctttccggctc-aaatagctctccac |
207 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| ||| |||||||||| ||||||||||||||||||||||| || || |||||||||||||| |
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| T |
46529963 |
agtagttgcgtgtgttgtatttagaacaattgttctcctgt----aaccatttaactctaaatactggatgtatctttctggttcaaaatagctctccac |
46529868 |
T |
|
| Q |
208 |
aagggtcattaataataatgtacctaataatacacaacatacataatcccccnnnnnnnnnnnnnnnngttactatataatcccattgttgcagcaagta |
307 |
Q |
| |
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|||||||| ||||||||| ||||||||||||||||||||||||||||||| ||||||| ||||||||||||||| |||||||| |
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| T |
46529867 |
aagggtcactaataataacgtacctaataatacacaacatacataatcccgttttttttttttttttggttactacataatcccattgttgtagcaagta |
46529768 |
T |
|
| Q |
308 |
ttttgaattaaacggggtcaatgaaatttggtgcat |
343 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| |
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|
| T |
46529767 |
ttttgaattaaacggggtcaatgaaatttggtgcat |
46529732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 9 - 128
Target Start/End: Original strand, 46324359 - 46324478
Alignment:
| Q |
9 |
agcataggaaataagtaatcacatttatgaattcatcaagaagttctgagcttatctgcaaatgaaataatcttgctgctatgtctatttcccggttctt |
108 |
Q |
| |
|
|||| ||||||| ||||||||||||||||||||||||||||||||||||||| | ||| ||||||||| ||| |||| ||||||| | || ||||| |
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| T |
46324359 |
agcagaggaaatcagtaatcacatttatgaattcatcaagaagttctgagctgacctgatgatgaaataacgatgccgctaagtctattacacgattctt |
46324458 |
T |
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| Q |
109 |
agtagttgcgtgtgttgtat |
128 |
Q |
| |
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||||||||| |||||||||| |
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| T |
46324459 |
agtagttgcatgtgttgtat |
46324478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 14 - 77
Target Start/End: Complemental strand, 46519283 - 46519220
Alignment:
| Q |
14 |
aggaaataagtaatcacatttatgaattcatcaagaagttctgagcttatctgcaaatgaaata |
77 |
Q |
| |
|
||||||| |||||||||||||| |||||||||||||| ||||||||| |||||||||||||||| |
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|
| T |
46519283 |
aggaaattagtaatcacatttacgaattcatcaagaaattctgagctgatctgcaaatgaaata |
46519220 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 14 - 65
Target Start/End: Complemental strand, 46481467 - 46481416
Alignment:
| Q |
14 |
aggaaataagtaatcacatttatgaattcatcaagaagttctgagcttatct |
65 |
Q |
| |
|
||||||| ||||||||||||||||| || ||||||||||||||| ||||||| |
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|
| T |
46481467 |
aggaaatcagtaatcacatttatgattttatcaagaagttctgatcttatct |
46481416 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 14 - 60
Target Start/End: Original strand, 46328796 - 46328842
Alignment:
| Q |
14 |
aggaaataagtaatcacatttatgaattcatcaagaagttctgagct |
60 |
Q |
| |
|
||||||| |||||| ||||||| |||||||||| ||||||||||||| |
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| T |
46328796 |
aggaaatcagtaattacatttacgaattcatcatgaagttctgagct |
46328842 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 96; Significance: 5e-47; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 28 - 151
Target Start/End: Original strand, 7493195 - 7493318
Alignment:
| Q |
28 |
cacatttatgaattcatcaagaagttctgagcttatctgcaaatgaaataatcttgctgctatgtctatttcccggttcttagtagttgcgtgtgttgta |
127 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||| ||||| |||| ||||||||||||||||||||||| || |
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| T |
7493195 |
cacatttatgaattcatcaaaaagttctgagctgatctgcaaatgaaataatcttgctgctaagtctaattcctggttcttagtagttgcgtgtgttcta |
7493294 |
T |
|
| Q |
128 |
tttagaacaattgttctcttgtaa |
151 |
Q |
| |
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|||||||||||||||| ||||||| |
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| T |
7493295 |
tttagaacaattgttcacttgtaa |
7493318 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 31 - 151
Target Start/End: Original strand, 7476508 - 7476628
Alignment:
| Q |
31 |
atttatgaattcatcaagaagttctgagcttatctgcaaatgaaataatcttgctgctatgtctatttcccggttcttagtagttgcgtgtgttgtattt |
130 |
Q |
| |
|
||||||||||||||||| |||||||||||| |||||| ||||||||||||||||||||| ||||| |||| ||||||||||||||||||||||| ||||| |
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| T |
7476508 |
atttatgaattcatcaaaaagttctgagctgatctgctaatgaaataatcttgctgctaagtctaattcctggttcttagtagttgcgtgtgttctattt |
7476607 |
T |
|
| Q |
131 |
agaacaattgttctcttgtaa |
151 |
Q |
| |
|
||||||||||||| ||||||| |
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|
| T |
7476608 |
agaacaattgttcacttgtaa |
7476628 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 200 - 257
Target Start/End: Original strand, 7493332 - 7493389
Alignment:
| Q |
200 |
ctctccacaagggtcattaataataatgtacctaataatacacaacatacataatccc |
257 |
Q |
| |
|
|||||||||||||||| |||||||| |||||||||||||||||||||||||||||| |
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|
| T |
7493332 |
ctctccacaagggtcactaataatatcttacctaataatacacaacatacataatccc |
7493389 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 284 - 343
Target Start/End: Original strand, 7476692 - 7476751
Alignment:
| Q |
284 |
ataatcccattgttgcagcaagtattttgaattaaacggggtcaatgaaatttggtgcat |
343 |
Q |
| |
|
||||||||||||||| ||||||| |||||||||||| ||||||| ||||| ||||||||| |
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|
| T |
7476692 |
ataatcccattgttgtagcaagtcttttgaattaaaaggggtcagtgaaaattggtgcat |
7476751 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 200 - 257
Target Start/End: Original strand, 7476642 - 7476699
Alignment:
| Q |
200 |
ctctccacaagggtcattaataataatgtacctaataatacacaacatacataatccc |
257 |
Q |
| |
|
|||||||||||||||| |||||||| ||||||||||| |||||||||||||||||| |
|
|
| T |
7476642 |
ctctccacaagggtcactaataatatcttacctaataatgcacaacatacataatccc |
7476699 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 284 - 343
Target Start/End: Original strand, 7493382 - 7493441
Alignment:
| Q |
284 |
ataatcccattgttgcagcaagtattttgaattaaacggggtcaatgaaatttggtgcat |
343 |
Q |
| |
|
||||||||||||||| ||||||| |||| ||||||| ||||||| ||||| ||||||||| |
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|
| T |
7493382 |
ataatcccattgttgtagcaagtcttttcaattaaaaggggtcagtgaaaattggtgcat |
7493441 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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