View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16521_low_48 (Length: 361)
Name: NF16521_low_48
Description: NF16521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16521_low_48 |
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Alignment Details
Target: chr7 (Bit Score: 333; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 1 - 349
Target Start/End: Original strand, 44828989 - 44829337
Alignment:
| Q |
1 |
actcttcatcactatcactgcatgctaatgtttcaccttcctgatgattataatatacatttctttttctagaaactgcctgatctgcagtcattttttc |
100 |
Q |
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| T |
44828989 |
actcttcatcactatcactgcatactaatgtttcaccttcctgatgattataatatacatttctttttctagaaactgcctgatctgcagtcattttttc |
44829088 |
T |
|
| Q |
101 |
atttctattttgcaagaaatgttttcaaaaagtagtaaatagacgacacaaatttaacatagattgatcaataacatttgacatcaaatgcatattaaac |
200 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44829089 |
atttctattttgcaagaaatgttttcagaaagtagtaaatagacgacacaaatttaacatagattgatcaataacatttgacatcaaatgcatattaaac |
44829188 |
T |
|
| Q |
201 |
atacactttcacttcctaaaaattttcatgtaataggattcacaacatgtcattgaaatttataagtcaaacacacctggctaaatgtatccaagacgta |
300 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
44829189 |
atacactttcacttcctaaaaattttcatgtaagaggattcacaacatgtcattgaaatttataattcaaacacacctggctaaatgtatccaagacgta |
44829288 |
T |
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| Q |
301 |
tatggaggtaacctgttgatgcttggcatcctgatagttctcacaggtt |
349 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44829289 |
tatggaggtaacctgttgatgcttggcatcctgatagttctcacaggtt |
44829337 |
T |
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