View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16521_low_5 (Length: 622)
Name: NF16521_low_5
Description: NF16521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16521_low_5 |
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| [»] scaffold0065 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 319; Significance: 1e-180; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 149 - 598
Target Start/End: Complemental strand, 8959159 - 8958725
Alignment:
| Q |
149 |
tatcagaaaacgtgcatacgtaccattgtttgttgtaaatgtgaaaccaaacacacacctggaggtgtatgggattggaggtgtatgggattcagacaaa |
248 |
Q |
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| T |
8959159 |
tatcagaaaacgtgcatacgtacttttgtatgttgtaaatgtgaaaccaaacagacacctggaggtgtatgg----------------gattcagacaaa |
8959076 |
T |
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| Q |
249 |
atcaaactaaaaattattcaannnnnnnnn-attcaattcgaaaaccaaactaagccaaatgaaattgaacggaattgattcggttctcaattttttatt |
347 |
Q |
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| T |
8959075 |
atcaaactaaaaattattcaattttttttttattcaattcgaaaaccaaactaagccaaatgaaattgaacggaattggttcggttctcaattttttatt |
8958976 |
T |
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| Q |
348 |
tgaaaatccaataatccgatgacttagctaataaccagcattttaccaatatttttacatcaaaacacaacattttccaactctattgtggaagtcattc |
447 |
Q |
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| T |
8958975 |
tgaaaatccaataatccgatgacttagctaataaccagcattttactaacatttttacatcaaaacacaacattttccaactcggttatggaagtcattc |
8958876 |
T |
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| Q |
448 |
atctccaacttttttgtcttattggttatatcaaggtcggtttgtaagaagtctcaaacattttcaaatatattaagacattcttgcattgtggagtcca |
547 |
Q |
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| T |
8958875 |
atctccaacttttttgtcttattggttatatcaaggtcggtttgtaagaagtctcgaacattttcaaatatattaagacattcttgcattgtggagtcca |
8958776 |
T |
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| Q |
548 |
attttatgcgtcttaataaccttcttatttatcatttcacaatgcttcata |
598 |
Q |
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| T |
8958775 |
attttatgcgtcttaataaccttcttatttatcatttcacaatgcttcata |
8958725 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 11 - 157
Target Start/End: Complemental strand, 8959491 - 8959344
Alignment:
| Q |
11 |
cataggtgtgatgtgagagatgtagtgcacgtttgatactactgtgtttataaaa-caaagtttaatgaaaatcacggttaaaaatcatgttagcgtaga |
109 |
Q |
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| T |
8959491 |
catagatgtgatgtgagagatgtagtgcacgtttgatactactatgtttataaaaacaaagtttgataaaaatcacggctaaaaatcatgttagcgtaga |
8959392 |
T |
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| Q |
110 |
agttggtattttgagcatctcaaaatcattgcaaaaatgtatcagaaa |
157 |
Q |
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| T |
8959391 |
agttggtattttgagcatctcaaaatcactgcaaaaatgtatcagaaa |
8959344 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0065 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0065
Description:
Target: scaffold0065; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 69 - 206
Target Start/End: Complemental strand, 49601 - 49464
Alignment:
| Q |
69 |
agtttaatgaaaatcacggttaaaaatcatgttagcgtagaagttggtattttgagcatctcaaaatcattgcaaaaatgtatcagaaaacgtgcatacg |
168 |
Q |
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| T |
49601 |
agtttaatgaaaatcacgacaaaaaaccatgtaagcgtagaagttagtatttagagcttctagagatcatggcaacaacgcattgaaaagcgtgcaaacg |
49502 |
T |
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| Q |
169 |
taccattgtttgttgtaaatgtgaaaccaaacacacac |
206 |
Q |
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| T |
49501 |
tgcttttgtttattgcaaacgggaaaccaaacacacac |
49464 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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