View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16521_low_52 (Length: 345)
Name: NF16521_low_52
Description: NF16521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16521_low_52 |
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Alignment Details
Target: chr8 (Bit Score: 290; Significance: 1e-163; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 10 - 327
Target Start/End: Complemental strand, 32534682 - 32534365
Alignment:
| Q |
10 |
agtgagatgaatgcgaactgagttttggtgacaaattgtatcaagctaggaagcatgtgcaggacatgtctagaataacaagagctcattgacatgtgat |
109 |
Q |
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| T |
32534682 |
agtgatatgaatgcgaactgagttttggtgacaaattgtatcaagctaggaagcatgtgtaggacatgtatagaataacaagaggtcattgacatgtgat |
32534583 |
T |
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| Q |
110 |
gaccaattgtagattctacaagacatgatgggctaagatacaacgtgcaaacttaatataatgctaaaataaaaatacaaattctaaattatactactaa |
209 |
Q |
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| T |
32534582 |
gaccaattgtagattctacaagacatgatgggctaagatacaacgtgcaaacttaatataatgctaacataaaaatacaaattctaaattatactactaa |
32534483 |
T |
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| Q |
210 |
agacatcattgtttctcaagtcagcattagtcattataaaatactacagtatttttatcaaacaattgtgctatcccagtactattgatactgaaattca |
309 |
Q |
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| T |
32534482 |
agacatcattgtttcttaagtcagcattagtcattatataatactacagtatttttatcaaacaattgtgctatcccagtactattgatactgaaattca |
32534383 |
T |
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| Q |
310 |
agcatgattgaattgtgt |
327 |
Q |
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| T |
32534382 |
agcatgattgaattgtgt |
32534365 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 25 - 61
Target Start/End: Complemental strand, 32549995 - 32549959
Alignment:
| Q |
25 |
aactgagttttggtgacaaattgtatcaagctaggaa |
61 |
Q |
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| T |
32549995 |
aactgagttttggagacaaattgtatcaagctaggaa |
32549959 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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