View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16521_low_53 (Length: 340)

Name: NF16521_low_53
Description: NF16521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16521_low_53
NF16521_low_53
[»] chr5 (14 HSPs)
chr5 (1-322)||(28080503-28080824)
chr5 (2-80)||(28080871-28080949)
chr5 (2-80)||(28080934-28081012)
chr5 (2-84)||(28080804-28080886)
chr5 (2-52)||(27931033-27931083)
chr5 (2-47)||(27930013-27930058)
chr5 (2-47)||(27930421-27930466)
chr5 (2-47)||(27930625-27930670)
chr5 (2-47)||(28081171-28081216)
chr5 (2-47)||(28081375-28081420)
chr5 (2-47)||(28081579-28081624)
chr5 (2-47)||(28081783-28081828)
chr5 (2-47)||(27930217-27930262)
chr5 (2-47)||(27930829-27930874)


Alignment Details
Target: chr5 (Bit Score: 318; Significance: 1e-179; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 1 - 322
Target Start/End: Complemental strand, 28080824 - 28080503
Alignment:
Q  1 ccttttgaacagcaatcgttatcatcatctaatcatttgttcaacagttcaagacattgccaatcttttgaccagcgatcgttacttcatatgaatgatt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  28080824 ccttttgaacagcaatcgttatcatcatctaatcatttgttcaacagttcaagacattgccgatcttttgaccagcgatcgttacttcatatgaatgatt 28080725  T
Q  101 ctacaggtactatcaattttccggttgatcctctcattgatatttctcaacactcgaatatgatgagtattggcaacaagaatttgtatccacacttatc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28080724 ctacaggtactatcaattttccggttgatcctctcattgatatttctcaacactcgaatatgatgagtattggcaacaagaatttgtatccacacttatc 28080625  T
Q  201 ctatcaagggacaccaactctacaattgcatcatgtttctgattatgcagtagataacaatgtcatcaatgatgatgttcagattattgataacattaat 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28080624 ctatcaagggacaccaactctacaattgcatcatgtttctgattatgcagtagataacaatgtcatcaatgatgatgttcagattattgataacattaat 28080525  T
Q  301 cttgatttttggaatgagagac 322  Q
    ||||||||||||||||||||||    
T  28080524 cttgatttttggaatgagagac 28080503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 2 - 80
Target Start/End: Complemental strand, 28080949 - 28080871
Alignment:
Q  2 cttttgaacagcaatcgttatcatcatctaatcatttgttcaacagttcaagacattgccaatcttttgaccagcgatc 80  Q
    ||||||| |||| ||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  28080949 cttttgaccagcgatcattatcatcatctaatcatttgttcaacagttcaagacatcgccaatcttttgaccagcgatc 28080871  T

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Target: chr5; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 2 - 80
Target Start/End: Complemental strand, 28081012 - 28080934
Alignment:
Q  2 cttttgaacagcaatcgttatcatcatctaatcatttgttcaacagttcaagacattgccaatcttttgaccagcgatc 80  Q
    ||||||||| || ||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  28081012 cttttgaactgcgatcattatcatcatctaatcatttgttcaacagttcaagacatcgccaatcttttgaccagcgatc 28080934  T

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Target: chr5; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 2 - 84
Target Start/End: Complemental strand, 28080886 - 28080804
Alignment:
Q  2 cttttgaacagcaatcgttatcatcatctaatcatttgttcaacagttcaagacattgccaatcttttgaccagcgatcgtta 84  Q
    ||||||| |||| ||| |||||||||||||||||||| |||||||||||||||||||||||| ||||||| |||| |||||||    
T  28080886 cttttgaccagcgatcattatcatcatctaatcattttttcaacagttcaagacattgccaaccttttgaacagcaatcgtta 28080804  T

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Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 2 - 52
Target Start/End: Original strand, 27931033 - 27931083
Alignment:
Q  2 cttttgaacagcaatcgttatcatcatctaatcatttgttcaacagttcaa 52  Q
    ||||||| || | ||| ||||||||||||||||||||||||||||||||||    
T  27931033 cttttgaccaacgatcattatcatcatctaatcatttgttcaacagttcaa 27931083  T

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Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 2 - 47
Target Start/End: Original strand, 27930013 - 27930058
Alignment:
Q  2 cttttgaacagcaatcgttatcatcatctaatcatttgttcaacag 47  Q
    ||||||| |||| ||| |||||||||||||||||||||||||||||    
T  27930013 cttttgaccagcgatcattatcatcatctaatcatttgttcaacag 27930058  T

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Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 2 - 47
Target Start/End: Original strand, 27930421 - 27930466
Alignment:
Q  2 cttttgaacagcaatcgttatcatcatctaatcatttgttcaacag 47  Q
    ||||||| |||| ||| |||||||||||||||||||||||||||||    
T  27930421 cttttgaccagcgatcattatcatcatctaatcatttgttcaacag 27930466  T

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Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 2 - 47
Target Start/End: Original strand, 27930625 - 27930670
Alignment:
Q  2 cttttgaacagcaatcgttatcatcatctaatcatttgttcaacag 47  Q
    ||||||| |||| ||| |||||||||||||||||||||||||||||    
T  27930625 cttttgaccagcgatcattatcatcatctaatcatttgttcaacag 27930670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 2 - 47
Target Start/End: Complemental strand, 28081216 - 28081171
Alignment:
Q  2 cttttgaacagcaatcgttatcatcatctaatcatttgttcaacag 47  Q
    ||||||| |||| ||| |||||||||||||||||||||||||||||    
T  28081216 cttttgaccagcgatcattatcatcatctaatcatttgttcaacag 28081171  T

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Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 2 - 47
Target Start/End: Complemental strand, 28081420 - 28081375
Alignment:
Q  2 cttttgaacagcaatcgttatcatcatctaatcatttgttcaacag 47  Q
    ||||||| |||| ||| |||||||||||||||||||||||||||||    
T  28081420 cttttgaccagcgatcattatcatcatctaatcatttgttcaacag 28081375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 2 - 47
Target Start/End: Complemental strand, 28081624 - 28081579
Alignment:
Q  2 cttttgaacagcaatcgttatcatcatctaatcatttgttcaacag 47  Q
    ||||||| |||| ||| |||||||||||||||||||||||||||||    
T  28081624 cttttgaccagcgatcattatcatcatctaatcatttgttcaacag 28081579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 2 - 47
Target Start/End: Complemental strand, 28081828 - 28081783
Alignment:
Q  2 cttttgaacagcaatcgttatcatcatctaatcatttgttcaacag 47  Q
    ||||||| |||| ||| |||||||||||||||||||||||||||||    
T  28081828 cttttgaccagcgatcattatcatcatctaatcatttgttcaacag 28081783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 47
Target Start/End: Original strand, 27930217 - 27930262
Alignment:
Q  2 cttttgaacagcaatcgttatcatcatctaatcatttgttcaacag 47  Q
    ||||||| |||||||| ||||||||||||||| |||||||| ||||    
T  27930217 cttttgaccagcaatcattatcatcatctaattatttgttcgacag 27930262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 47
Target Start/End: Original strand, 27930829 - 27930874
Alignment:
Q  2 cttttgaacagcaatcgttatcatcatctaatcatttgttcaacag 47  Q
    ||||||| || | ||| |||||||||||||||||||||||||||||    
T  27930829 cttttgaccaacgatcattatcatcatctaatcatttgttcaacag 27930874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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