View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16521_low_55 (Length: 331)
Name: NF16521_low_55
Description: NF16521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16521_low_55 |
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| [»] chr8 (9 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 264; Significance: 1e-147; HSPs: 9)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 16 - 331
Target Start/End: Original strand, 31646194 - 31646509
Alignment:
| Q |
16 |
cacgtacaagctctggaacttttatcaacagaggacatgataaaattctgaggaatattgagcaaagaattgctgattttacttttatacctgtaggtgc |
115 |
Q |
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| T |
31646194 |
cacgtacaagctctggaacttttatcaacagaggacatgataaaattctgaggaatattgagcaaagaattgctgattttacttttatacctgtaggtgc |
31646293 |
T |
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| Q |
116 |
gttctttatgcattttctctgcatttatacatggcatgttatgtttcatcatatacttaaacaaccattaatttggctatgtttcacaatatgcagagaa |
215 |
Q |
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| T |
31646294 |
gttctttatgcattttctctgcatttatacatggcatgttatatttcatcatatatttaaacaaccattaatttggctatgtttcacaatatgcagagaa |
31646393 |
T |
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| Q |
216 |
tggcgaaagcgttaatattctccattatgaagttggacaaaagtacgattttcatactgactactttcaagatgagattaatactaagcatgggggtgag |
315 |
Q |
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| T |
31646394 |
tggcgaaagcgttaatattctccattatgaagttggacaaaagtacgaacctcatcctgatttctttacagatgagattaatactaagaacgggggtgag |
31646493 |
T |
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| Q |
316 |
cgtatagcaacaatgt |
331 |
Q |
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||| |||||||||||| |
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| T |
31646494 |
cgtgtagcaacaatgt |
31646509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 165 - 331
Target Start/End: Original strand, 31637658 - 31637823
Alignment:
| Q |
165 |
catatacttaaacaaccattaatttggctatgtttcacaatatgcagagaatggcgaaagcgttaatattctccattatgaagttggacaaaagtacgat |
264 |
Q |
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| T |
31637658 |
catatacttaaacaactattatttaagtt-tgtttcaaaacatgcagagcatggcgaagacgttaatattctccattatgaagttggacaaaagtacgat |
31637756 |
T |
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| Q |
265 |
tttcatactgactactttcaagatgagattaatactaagcatgggggtgagcgtatagcaacaatgt |
331 |
Q |
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| T |
31637757 |
tttcatactgactactttgaagatgaggttaatactaagcatgggggtgagcgtatagcaacaatgt |
31637823 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 16 - 137
Target Start/End: Original strand, 31637357 - 31637478
Alignment:
| Q |
16 |
cacgtacaagctctggaacttttatcaacagaggacatgataaaattctgaggaatattgagcaaagaattgctgattttacttttatacctgtaggtgc |
115 |
Q |
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| T |
31637357 |
cacgaacaagctctggaacttttatcgacagaggatatgataaaattttgagcgatatcgagaaaagaattgctgattttacttttatacctgtaggtgt |
31637456 |
T |
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| Q |
116 |
gttctttatgcattttctctgc |
137 |
Q |
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| T |
31637457 |
gttctttatgcattttgtctgc |
31637478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 151 - 330
Target Start/End: Original strand, 31630318 - 31630497
Alignment:
| Q |
151 |
atgttatgtttcatcatatacttaaacaaccattaatttggctatgtttcacaatatgcagagaatggcgaaagcgttaatattctccattatgaagttg |
250 |
Q |
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||||||| ||||||||||||||||||||||||||| || || ||||||||| ||||||||||| ||||||||| ||||| |||||| ||||||||||| |
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| T |
31630318 |
atgttatttttcatcatatacttaaacaaccattacttgagccgtgtttcacattatgcagagaacggcgaaagctttaatgttctccgttatgaagttg |
31630417 |
T |
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| Q |
251 |
gacaaaagtacgattttcatactgactactttcaagatgagattaatactaagcatgggggtgagcgtatagcaacaatg |
330 |
Q |
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| T |
31630418 |
gacaaaagtatgatcctcatttagactactttgcggatgattataatactgtgaatggaggtcagcgtatagcaacaatg |
31630497 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 21 - 117
Target Start/End: Original strand, 31630092 - 31630188
Alignment:
| Q |
21 |
acaagctctggaacttttatcaacagaggacatgataaaattctgaggaatattgagcaaagaattgctgattttacttttatacctgtaggtgcgt |
117 |
Q |
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| T |
31630092 |
acaagctctggaacttttcttgacagaggaggtgatgaaattgtgaggaatattgagaaaagaatcgctgattttacttttatacctgtaggtgcgt |
31630188 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 174 - 260
Target Start/End: Original strand, 31656687 - 31656773
Alignment:
| Q |
174 |
aaacaaccattaatttggctatgtttcacaatatgcagagaatggcgaaagcgttaatattctccattatgaagttggacaaaagta |
260 |
Q |
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| T |
31656687 |
aaacaaccattacttgagccgtgtttcacaatatgcagagcatggcgaaagctttaatgttctccattatgaagttggacaaaagta |
31656773 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 170 - 260
Target Start/End: Original strand, 31651880 - 31651970
Alignment:
| Q |
170 |
acttaaacaaccattaatttggctatgtttcacaatatgcagagaatggcgaaagcgttaatattctccattatgaagttggacaaaagta |
260 |
Q |
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| T |
31651880 |
acttaaacaaccattacttgaactgtgtttcacaatatgcagagcatggtgaaaactttaatgttctccattatgaagttggacaaaagta |
31651970 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 21 - 114
Target Start/End: Original strand, 31651658 - 31651751
Alignment:
| Q |
21 |
acaagctctggaacttttatcaacagaggacatgataaaattctgaggaatattgagcaaagaattgctgattttacttttatacctgtaggtg |
114 |
Q |
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| T |
31651658 |
acaagctctggagcttttcttaagagaggaagtgatagaattgtgaagaatattgagagaagaattgctgattttacttttatacctgtaggtg |
31651751 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 21 - 117
Target Start/End: Original strand, 31656437 - 31656533
Alignment:
| Q |
21 |
acaagctctggaacttttatcaacagaggacatgataaaattctgaggaatattgagcaaagaattgctgattttacttttatacctgtaggtgcgt |
117 |
Q |
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| T |
31656437 |
acaagctctggaacatttcttgacagagaaggtgatgaaattgtgagcaatattgagaaaagaatcgctgattttacttttatacctgtaggtgcgt |
31656533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 18 - 113
Target Start/End: Complemental strand, 9105549 - 9105454
Alignment:
| Q |
18 |
cgtacaagctctggaacttttatcaacagaggacatgataaaattctgaggaatattgagcaaagaattgctgattttacttttatacctgtaggt |
113 |
Q |
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| T |
9105549 |
cgtactagctctggaacatttctggccaggggacgtgataagattgtgaggaatattgagaaaaaaattgccgactttacttttattcctgtaggt |
9105454 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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