View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16521_low_57 (Length: 317)
Name: NF16521_low_57
Description: NF16521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16521_low_57 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 267; Significance: 1e-149; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 15 - 317
Target Start/End: Original strand, 46260724 - 46261027
Alignment:
| Q |
15 |
atatcagcagccttattggactggtctacataagcagtcttctttggactcatgagattttcactgctttcggtattttcatgttgagtcggtgagcctt |
114 |
Q |
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| T |
46260724 |
atatcagcagccttattggactggtctacataagcagtcttctttggactcatgagattttcactgctttcggtattttcatgttgagtcggtgagcctt |
46260823 |
T |
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| Q |
115 |
cacgtgacttcagtgacatttgattgactttgttttcttcatccgcttctgaagattttgtacttgaattagaatggtcatgatcctgtccattac-nnn |
213 |
Q |
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| T |
46260824 |
cacgtgacttcagtgacatttgattgactttgttttcttcacccgcttctgaagattttgtacttgaattagaatggtcatgatcctgtccattacaaaa |
46260923 |
T |
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| Q |
214 |
nnnnttgaattagatagggtaaggggatagcttgtacaatacacaaagggtaaaataaaaactaagagcagttaaacaagggcagtgaatactgaaaaat |
313 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
46260924 |
aaaattgaattagatagggtaaggggatagcttgtacaatacacaaagggtaaaataaaaactaagagcagttaagcaagggcagtgaatactgaaaaat |
46261023 |
T |
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| Q |
314 |
gaaa |
317 |
Q |
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|||| |
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| T |
46261024 |
gaaa |
46261027 |
T |
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