View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16521_low_58 (Length: 316)
Name: NF16521_low_58
Description: NF16521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16521_low_58 |
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Alignment Details
Target: chr1 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 17 - 299
Target Start/End: Complemental strand, 3912436 - 3912155
Alignment:
| Q |
17 |
atataaaacattatccacatccctgaatgacttcttgatctccaacattgttgacccttcaattgagacattcaaacatattttagcattattgatacca |
116 |
Q |
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| T |
3912436 |
atataaaacattatccacatccctgaatgacttcttgatctccaacattgttgacccttcaattgagacattcaaacatattttagcattattgatacca |
3912337 |
T |
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| Q |
117 |
tataggcttcatcttgttaatatatacttcatgccaacattgttgaagttggaaacattattaaaagaaaattaacaagatccaaactataaccaagttt |
216 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
3912336 |
tatagtcttcatcttgttaatatatacttcatgccaacattgttgaagttggaaacataattaaaagaaaattaacaagatccaaactataaccaagttt |
3912237 |
T |
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| Q |
217 |
aatgttattcaacagaaaaaagaaaaggagctgacnnnnnnncaaataaaaaattgggactaactaataacggttaaggtaat |
299 |
Q |
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|||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
3912236 |
aatgttattcaacaga-aaaagaaaaggagctgactttttttcaaataaaaaattgggactaactaataacggttaaggtaat |
3912155 |
T |
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