View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16521_low_62 (Length: 291)
Name: NF16521_low_62
Description: NF16521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16521_low_62 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 263; Significance: 1e-147; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 263; E-Value: 1e-147
Query Start/End: Original strand, 9 - 291
Target Start/End: Original strand, 33115194 - 33115476
Alignment:
| Q |
9 |
gagaagaacttaagcacttgcagaaattcagtatgagtttgggattaattcagtatgtgaagttgctaataaaggaaatgaaatcccttagaaggtctca |
108 |
Q |
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| T |
33115194 |
gagaacaacttaagcacttgcagaaattcggtatgagtttgggattaattcggtatgtgaagttgctaataaaggaagtgaaatcccttagaaggtctca |
33115293 |
T |
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| Q |
109 |
gtcgtcaaacaagtggtgcaacgatggagggaaaaacgcacgtggaggcatccagatttttctttctggcaggttcagaggcaattcaggcacttcataa |
208 |
Q |
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| T |
33115294 |
gtcgtcaaacaagtggtgcaacgatggagggaaaaacgcacgtggaggcatccagatttttctttctggcaggttcagaggcaattcaggcacttcataa |
33115393 |
T |
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| Q |
209 |
actctgtcaataaactcataccagtcatccatgcctaatagagaactaacaaacggcttaacttcaaaaacttcaaactcatc |
291 |
Q |
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| T |
33115394 |
actctatcaataaactcataccagtcatccatgcctaatagagaactaacaaacggcttaacttcaaaaacttcaaactcatc |
33115476 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 113 - 291
Target Start/End: Original strand, 33167015 - 33167193
Alignment:
| Q |
113 |
tcaaacaagtggtgcaacgatggagggaaaaacgcacgtggaggcatccagatttttctttctggcaggttcagaggcaattcaggcacttcataaactc |
212 |
Q |
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| T |
33167015 |
tcaaaaaagttgtgcaacgatggaggaaaaaatgctagtgaaggtcggcggatttttctttctggcaagttttgaggcaattcaggcacttcataaactt |
33167114 |
T |
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| Q |
213 |
tgtcaataaactcataccagtcatccatgcctaatagagaactaacaaacggcttaacttcaaaaacttcaaactcatc |
291 |
Q |
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| T |
33167115 |
tgtccataaactcggaccagtcacccatgcctaatagacgactaacaaacgacttaacttcaaaagcttcaaactcatc |
33167193 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 66 - 110
Target Start/End: Complemental strand, 44834977 - 44834933
Alignment:
| Q |
66 |
tgaagttgctaataaaggaaatgaaatcccttagaaggtctcagt |
110 |
Q |
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| T |
44834977 |
tgaagttgctagtaaaggaagtgaaatcccttagaagctctcagt |
44834933 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 242 - 287
Target Start/End: Complemental strand, 44827275 - 44827230
Alignment:
| Q |
242 |
cctaatagagaactaacaaacggcttaacttcaaaaacttcaaact |
287 |
Q |
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| T |
44827275 |
cctaatagacgactaacaaacggctgaacttcaaatacttcaaact |
44827230 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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