View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16521_low_64 (Length: 286)
Name: NF16521_low_64
Description: NF16521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16521_low_64 |
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Alignment Details
Target: chr2 (Bit Score: 222; Significance: 1e-122; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 272
Target Start/End: Original strand, 36160269 - 36160544
Alignment:
| Q |
1 |
accaccaaatatatgaacattctttcaaataagacaatcgctgaaaccataacaagattatattcacatacatctcaaatttaaacatgtacagatgaaa |
100 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36160269 |
accaccaaatatatgaacattccttcaaataagacaatcgctgaaaccataacaagattatattcacatacatctcaaatttaaacatgtacagatgaaa |
36160368 |
T |
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| Q |
101 |
attaaatcacttcagaatgannnnnnnacctcatcaagcagtgcactcaagcatccttgcatcagtcctttcagaattgccatagtcatgatccctaaga |
200 |
Q |
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| T |
36160369 |
attaaatcacttcagaatgatttttttacctcatcaagtagtgcactcaagtatccttgcatcagtcctttcagaattgccatagtcatgatccctaaga |
36160468 |
T |
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| Q |
201 |
aactgatatt----tagctcccttgagaagaaaaactataaggaagattaatgcttttgttggaagagattattct |
272 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
36160469 |
aactgatatttagctagctcccttgagaagaaaaactataaggaagattaatgctttagttggaagagattattct |
36160544 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 1 - 270
Target Start/End: Original strand, 36154541 - 36154815
Alignment:
| Q |
1 |
accaccaaatatatgaacattctttcaaataagacaa-tcgctgaaaccataacaagattatat--tcacatacatctcaaatttaaacatgtacagatg |
97 |
Q |
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||||||||| || |||||||||||||||||||||||| || ||||||||||||||||||||||| ||| || || ||||||||| |||||||||||||| |
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| T |
36154541 |
accaccaaacatctgaacattctttcaaataagacaaatcactgaaaccataacaagattatatattcatatgcacctcaaattttaacatgtacagatg |
36154640 |
T |
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| Q |
98 |
aaaattaaatcacttcagaatga--nnnnnnnacctcatcaagcagtgcactcaagcatccttgcatcagtcctttcagaattgccatagtcatgatccc |
195 |
Q |
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|||||||||||||||| ||| || ||||||||||||| |||||||||| |||||||||||| |||||||||||||||||||||||||||||| |
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| T |
36154641 |
aaaattaaatcacttctgaaggatttttttttacctcatcaagcaatgcactcaagtatccttgcatcaatcctttcagaattgccatagtcatgatccc |
36154740 |
T |
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| Q |
196 |
taagaaactgatatttagctc-ccttgagaagaaaaactataaggaagattaatgcttttgttggaagagattatt |
270 |
Q |
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|||||||| || || | ||| |||||||||||||||||||||||||||||||| ||| |||||||||||||||| |
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| T |
36154741 |
taagaaacagaaatatttctcttcttgagaagaaaaactataaggaagattaatg-tttagttggaagagattatt |
36154815 |
T |
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