View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16521_low_65 (Length: 279)
Name: NF16521_low_65
Description: NF16521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16521_low_65 |
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Alignment Details
Target: chr1 (Bit Score: 175; Significance: 3e-94; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 4 - 202
Target Start/End: Original strand, 25276224 - 25276422
Alignment:
| Q |
4 |
gtaatggccaaatgtgcgtttctgagttgcggcgtcaataataagcggagtgccaatggctcccgtaatttcgaaaagaatatagaactgacacttcata |
103 |
Q |
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| T |
25276224 |
gtaatggccaaatgtgcgtttctgagtttcggcgtcaataataagccgggtgccaatggctcccgtaatttcgaaaagaatatagaactgacacttcata |
25276323 |
T |
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| Q |
104 |
tcaaaggtttttccaatatcccacacctcacgtgtcaatgtttgacaggtatatttaaattactagaaatgttaatgtatcggtatcttaagttcaaca |
202 |
Q |
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| T |
25276324 |
tcaaaggtttttccaatatcccacacctcacgtgtcagtgtttgacaggtatatttaaattactagaaatgttaatgtatcagtatcttatgttcaaca |
25276422 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 213 - 269
Target Start/End: Original strand, 25276531 - 25276587
Alignment:
| Q |
213 |
cattacatggatatgtgacgcacttatctgtttttctctatatgggtatttgtgatg |
269 |
Q |
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| T |
25276531 |
cattacatggatatgtgacacacttaactgtttttctctataagggtatttgtgatg |
25276587 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 59
Target Start/End: Complemental strand, 17705235 - 17705181
Alignment:
| Q |
5 |
taatggccaaatgtgcgtttctgagttgcggcgtcaataataagcggagtgccaa |
59 |
Q |
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| T |
17705235 |
taatggccaaaggtgcgtttctgagttgcggcatcaatgatgagaggagtaccaa |
17705181 |
T |
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