View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16521_low_66 (Length: 279)
Name: NF16521_low_66
Description: NF16521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16521_low_66 |
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Alignment Details
Target: chr5 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 7 - 263
Target Start/End: Original strand, 40828123 - 40828382
Alignment:
| Q |
7 |
tgaaatgaaaaaatgtattctaaacaaaaaaggcaagatagaaactattcaagtgtgtgatcaaaagttccattcacactt---tttcaaatcataaact |
103 |
Q |
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| T |
40828123 |
tgaactgaaaaaatgtattctcaacaaaaaaggcaagatagaaactattcaagtgtgtgatcaaaagttccattcacacttctttttcaaatcataaact |
40828222 |
T |
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| Q |
104 |
agttcatgactctttgagaataatgtatgactaaatatttctatacgcgtaacatttaattttttccacgttaaggcaatatgaggtcagtttgatttga |
203 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
40828223 |
agttcatgactctttgagaataatgtatgactaaatatttctatacgcgtaacatttaattatttccacgttaaggcaatatgaggtcagtttgatttga |
40828322 |
T |
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| Q |
204 |
acaagtaatataagtacataatgcatctgtaaaaatataataacgaggacaaattctaac |
263 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
40828323 |
acaagtaatataagtacataatgcatctgtaataatataataacgaggacaaattctaac |
40828382 |
T |
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