View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16521_low_74 (Length: 250)

Name: NF16521_low_74
Description: NF16521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16521_low_74
NF16521_low_74
[»] chr5 (9 HSPs)
chr5 (14-231)||(25224909-25225126)
chr5 (14-231)||(25289065-25289282)
chr5 (14-231)||(25728122-25728339)
chr5 (39-208)||(25222485-25222660)
chr5 (39-208)||(25286641-25286816)
chr5 (125-212)||(26099248-26099335)
chr5 (30-88)||(25089935-25089993)
chr5 (30-88)||(25147905-25147963)
chr5 (28-86)||(26099142-26099200)
[»] chr1 (1 HSPs)
chr1 (124-226)||(25618030-25618132)


Alignment Details
Target: chr5 (Bit Score: 206; Significance: 1e-113; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 14 - 231
Target Start/End: Complemental strand, 25225126 - 25224909
Alignment:
Q  14 ataatactcgtgtacaatcagattgtgtgagagtcttgacataggaaacaagattgtctccatcatcgtcttcttggcagggaactacaggaggaggggg 113  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  25225126 ataatactcgtgtacaatcagattgtgtgagagtcttgacataggaaacaagattgtctccatcatcgtcttcttggccgggaactacaggaggaggggg 25225027  T
Q  114 ttcttggtcagttacgggagtcaggcgcagtttggcaaagacttcgtcggtgtgaggatcaacaaagagatcaacggaagagacgatgcatggaatggat 213  Q
    ||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25225026 ttcttggtcagttacgggagtcaggagcagtttggcaaagacctcgtcggtgtgaggatcaacaaagagatcaacggaagagacgatgcatggaatggat 25224927  T
Q  214 gaacggtaacgatcaaga 231  Q
    ||||||||||||||||||    
T  25224926 gaacggtaacgatcaaga 25224909  T

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Target: chr5; HSP #2
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 14 - 231
Target Start/End: Complemental strand, 25289282 - 25289065
Alignment:
Q  14 ataatactcgtgtacaatcagattgtgtgagagtcttgacataggaaacaagattgtctccatcatcgtcttcttggcagggaactacaggaggaggggg 113  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  25289282 ataatactcgtgtacaatcagattgtgtgagagtcttgacataggaaacaagattgtctccatcatcgtcttcttggccgggaactacaggaggaggggg 25289183  T
Q  114 ttcttggtcagttacgggagtcaggcgcagtttggcaaagacttcgtcggtgtgaggatcaacaaagagatcaacggaagagacgatgcatggaatggat 213  Q
    ||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25289182 ttcttggtcagttacgggagtcaggagcagtttggcaaagacctcgtcggtgtgaggatcaacaaagagatcaacggaagagacgatgcatggaatggat 25289083  T
Q  214 gaacggtaacgatcaaga 231  Q
    ||||||||||||||||||    
T  25289082 gaacggtaacgatcaaga 25289065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 14 - 231
Target Start/End: Original strand, 25728122 - 25728339
Alignment:
Q  14 ataatactcgtgtacaatcagattgtgtgagagtcttgacataggaaacaagattgtctccatcatcgtcttcttggcagggaactacaggaggaggggg 113  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  25728122 ataatactcgtgtacaatcagattgtgtgagagtcttgacataggaaacaagattgtctccatcatcgtcttcttggccgggaactacaggaggaggggg 25728221  T
Q  114 ttcttggtcagttacgggagtcaggcgcagtttggcaaagacttcgtcggtgtgaggatcaacaaagagatcaacggaagagacgatgcatggaatggat 213  Q
    ||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25728222 ttcttggtcagttacgggagtcaggagcagtttggcaaagacctcgtcggtgtgaggatcaacaaagagatcaacggaagagacgatgcatggaatggat 25728321  T
Q  214 gaacggtaacgatcaaga 231  Q
    ||||||||||||||||||    
T  25728322 gaacggtaacgatcaaga 25728339  T

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Target: chr5; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 39 - 208
Target Start/End: Original strand, 25222485 - 25222660
Alignment:
Q  39 tgtgagagtcttgacataggaaacaagattgtctccatcatcgtcttcttggcagggaactac------aggaggagggggttcttggtcagttacggga 132  Q
    ||||||||| |||| ||||||||||||||||| |||||| ||||||||||||| |||||| ||      ||||||||| ||||||||| ||||||  |||    
T  25222485 tgtgagagttttgaaataggaaacaagattgtttccatcgtcgtcttcttggccgggaacaacaggaggaggaggaggaggttcttgggcagttagcgga 25222584  T
Q  133 gtcaggcgcagtttggcaaagacttcgtcggtgtgaggatcaacaaagagatcaacggaagagacgatgcatggaa 208  Q
    || ||| |||||||||| || || ||||| ||| ||| |||||||||||||| |||||  || | |||||||||||    
T  25222585 gtgaggagcagtttggcgaaaacctcgtcagtgagagcatcaacaaagagattaacggctgaaatgatgcatggaa 25222660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 39 - 208
Target Start/End: Original strand, 25286641 - 25286816
Alignment:
Q  39 tgtgagagtcttgacataggaaacaagattgtctccatcatcgtcttcttggcagggaactac------aggaggagggggttcttggtcagttacggga 132  Q
    ||||||||| |||| ||||||||||||||||| |||||| ||||||||||||| |||||| ||      ||||||||| ||||||||| ||||||  |||    
T  25286641 tgtgagagttttgaaataggaaacaagattgtttccatcgtcgtcttcttggccgggaacaacaggaggaggaggaggaggttcttgggcagttagcgga 25286740  T
Q  133 gtcaggcgcagtttggcaaagacttcgtcggtgtgaggatcaacaaagagatcaacggaagagacgatgcatggaa 208  Q
    || ||| |||||||||| || || ||||| ||| ||| |||||||||||||| |||||  || | |||||||||||    
T  25286741 gtgaggagcagtttggcgaaaacctcgtcagtgagagcatcaacaaagagattaacggctgaaatgatgcatggaa 25286816  T

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Target: chr5; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 125 - 212
Target Start/End: Original strand, 26099248 - 26099335
Alignment:
Q  125 ttacgggagtcaggcgcagtttggcaaagacttcgtcggtgtgaggatcaacaaagagatcaacggaagagacgatgcatggaatgga 212  Q
    |||||||||| ||| ||||||||||||||||||| || |||||||||||||||| |||||||||||  |||| |||||| | ||||||    
T  26099248 ttacgggagtgaggagcagtttggcaaagacttcatctgtgtgaggatcaacaaggagatcaacggctgagatgatgcaggaaatgga 26099335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 30 - 88
Target Start/End: Complemental strand, 25089993 - 25089935
Alignment:
Q  30 atcagattgtgtgagagtcttgacataggaaacaagattgtctccatcatcgtcttctt 88  Q
    ||||||||| |||||| |||| |||||||||||||||||||  | ||||||||||||||    
T  25089993 atcagattgggtgagaatctttacataggaaacaagattgttgctatcatcgtcttctt 25089935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 30 - 88
Target Start/End: Complemental strand, 25147963 - 25147905
Alignment:
Q  30 atcagattgtgtgagagtcttgacataggaaacaagattgtctccatcatcgtcttctt 88  Q
    ||||||||| |||||| |||| |||||||||||||||||||  | ||||||||||||||    
T  25147963 atcagattgggtgagaatctttacataggaaacaagattgttgctatcatcgtcttctt 25147905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 28 - 86
Target Start/End: Original strand, 26099142 - 26099200
Alignment:
Q  28 caatcagattgtgtgagagtcttgacataggaaacaagattgtctccatcatcgtcttc 86  Q
    |||||||||||||||||| |||||||| ||||||||| |||||  ||||| ||||||||    
T  26099142 caatcagattgtgtgagaatcttgacaaaggaaacaacattgtaaccatcgtcgtcttc 26099200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 124 - 226
Target Start/End: Complemental strand, 25618132 - 25618030
Alignment:
Q  124 gttacgggagtcaggcgcagtttggcaaagacttcgtcggtgtgaggatcaacaaagagatcaacggaagagacgatgcatggaatggatgaacggtaac 223  Q
    ||||||||||| ||| |||||||||| |||||||| || |||| ||||||| ||| |||||| ||||  |||| |||||| |||||||||| ||||||||    
T  25618132 gttacgggagtgaggagcagtttggcgaagacttcatcagtgtaaggatcagcaaggagatcgacggtggagatgatgcacggaatggatggacggtaac 25618033  T
Q  224 gat 226  Q
    |||    
T  25618032 gat 25618030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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