View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16521_low_81 (Length: 235)

Name: NF16521_low_81
Description: NF16521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16521_low_81
NF16521_low_81
[»] chr5 (11 HSPs)
chr5 (57-222)||(8643942-8644107)
chr5 (140-222)||(8677618-8677700)
chr5 (114-222)||(8636654-8636762)
chr5 (133-218)||(8535307-8535392)
chr5 (128-218)||(1600495-1600585)
chr5 (1-63)||(8643859-8643921)
chr5 (133-218)||(9074935-9075020)
chr5 (155-222)||(8548302-8548369)
chr5 (161-218)||(8528780-8528837)
chr5 (107-222)||(9003247-9003365)
chr5 (130-218)||(2905159-2905250)
[»] scaffold0627 (1 HSPs)
scaffold0627 (155-222)||(4488-4555)
[»] chr6 (1 HSPs)
chr6 (155-222)||(16716175-16716242)
[»] chr4 (1 HSPs)
chr4 (161-218)||(9442941-9442998)
[»] chr1 (1 HSPs)
chr1 (161-212)||(5130640-5130691)
[»] chr7 (2 HSPs)
chr7 (149-218)||(48362069-48362138)
chr7 (184-218)||(35779694-35779728)


Alignment Details
Target: chr5 (Bit Score: 154; Significance: 8e-82; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 57 - 222
Target Start/End: Original strand, 8643942 - 8644107
Alignment:
Q  57 taggaagctcacatatatatttaggggaaagggtttgtatgatttgtaagggagcatcaaattcaatttgtcaatcaaaataaaatcttagcagctacat 156  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8643942 taggaagctcacatatatatttaggggaaagggtttgtatgatttgtaagggagcatcaaattcaatttgtcaatcaaaataaaatcttagcagctacat 8644041  T
Q  157 tctcaccttgagtggatattcagcacctcaatattgtctcctttcacaacatccttcaatgagatt 222  Q
    ||| ||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||    
T  8644042 tcttaccttgagtggatattcagcatctcagtattgtctcctttcacaacatccttcaatgagatt 8644107  T

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Target: chr5; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 140 - 222
Target Start/End: Original strand, 8677618 - 8677700
Alignment:
Q  140 aatcttagcagctacattctcaccttgagtggatattcagcacctcaatattgtctcctttcacaacatccttcaatgagatt 222  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8677618 aatcttagcagctacattcttaccttgagtggatattcagcacctcaatattgtctcctttcacaacatccttcaatgagatt 8677700  T

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Target: chr5; HSP #3
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 114 - 222
Target Start/End: Original strand, 8636654 - 8636762
Alignment:
Q  114 caaattcaatttgtcaatcaaaataaaatcttagcagctacattctcaccttgagtggatattcagcacctcaatattgtctcctttcacaacatccttc 213  Q
    ||||||| |||| |||||||||||||||| |||| | ||||||||| ||||||||||||||||||||||||| ||||||||||||||||| |||||||||    
T  8636654 caaattcgatttctcaatcaaaataaaatgttagaatctacattctaaccttgagtggatattcagcacctcgatattgtctcctttcacgacatccttc 8636753  T
Q  214 aatgagatt 222  Q
    |||||||||    
T  8636754 aatgagatt 8636762  T

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Target: chr5; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 133 - 218
Target Start/End: Original strand, 8535307 - 8535392
Alignment:
Q  133 aaaataaaatcttagcagctacattctcaccttgagtggatattcagcacctcaatattgtctcctttcacaacatccttcaatga 218  Q
    ||||||||||||||| ||||||||||| ||||||||||||||||||| |||||||||||||| ||||||| |||||||||||||||    
T  8535307 aaaataaaatcttagaagctacattcttaccttgagtggatattcagaacctcaatattgtcacctttcaaaacatccttcaatga 8535392  T

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Target: chr5; HSP #5
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 128 - 218
Target Start/End: Complemental strand, 1600585 - 1600495
Alignment:
Q  128 caatcaaaataaaatcttagcagctacattctcaccttgagtggatattcagcacctcaatattgtctcctttcacaacatccttcaatga 218  Q
    |||| |||||||||| || | ||||||||||| |||||||||||||||||||||||||||||||||| |||||||  ||||||||||||||    
T  1600585 caataaaaataaaatatttgaagctacattcttaccttgagtggatattcagcacctcaatattgtcccctttcaagacatccttcaatga 1600495  T

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Target: chr5; HSP #6
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 8643859 - 8643921
Alignment:
Q  1 ttgaaaaactacttattacttaacaagttttcctttctccaaataaaataccaaaataggaag 63  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  8643859 ttgaaaaactacttattacttaacaagttttcctttctccaaataaaatgccaaaataggaag 8643921  T

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Target: chr5; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 133 - 218
Target Start/End: Complemental strand, 9075020 - 9074935
Alignment:
Q  133 aaaataaaatcttagcagctacattctcaccttgagtggatattcagcacctcaatattgtctcctttcacaacatccttcaatga 218  Q
    |||||||| | |||| ||||||||||| ||||||||||||||||||||||||| ||||||||||||||||  ||||||||||||||    
T  9075020 aaaataaagtattagaagctacattcttaccttgagtggatattcagcacctcgatattgtctcctttcaagacatccttcaatga 9074935  T

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Target: chr5; HSP #8
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 155 - 222
Target Start/End: Complemental strand, 8548369 - 8548302
Alignment:
Q  155 attctcaccttgagtggatattcagcacctcaatattgtctcctttcacaacatccttcaatgagatt 222  Q
    ||||| || |||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||    
T  8548369 attcttactttgagtggatattcagcacctcaatattgtctcctttcatgacatccttcaatgagatt 8548302  T

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Target: chr5; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 161 - 218
Target Start/End: Original strand, 8528780 - 8528837
Alignment:
Q  161 accttgagtggatattcagcacctcaatattgtctcctttcacaacatccttcaatga 218  Q
    ||||||||||||||||||| |||||||||||| ||||||||| |||||||||||||||    
T  8528780 accttgagtggatattcagaacctcaatattgactcctttcaaaacatccttcaatga 8528837  T

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Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 107 - 222
Target Start/End: Original strand, 9003247 - 9003365
Alignment:
Q  107 ggagcatcaaattcaatttgtcaatcaaaataaaatcttagcagctacattctcacct---tgagtggatattcagcacctcaatattgtctcctttcac 203  Q
    ||||||||||||| ||||  | ||| ||||| |||| |||| |||||||| || ||||   ||||| || ||||| |||||||| ||||||||| || ||    
T  9003247 ggagcatcaaatttaattacttaatgaaaatcaaatattagaagctacatccttacctccttgagtagacattcaacacctcaacattgtctccatttac 9003346  T
Q  204 aacatccttcaatgagatt 222  Q
    | | |||||||||||||||    
T  9003347 agcctccttcaatgagatt 9003365  T

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Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 130 - 218
Target Start/End: Complemental strand, 2905250 - 2905159
Alignment:
Q  130 atcaaaataaaatcttagcagctacattctcaccttgagtggatattcagca---cctcaatattgtctcctttcacaacatccttcaatga 218  Q
    ||||||||||||| |||  |||||||||   ||||||||| ||| |||||||   |||||| ||||||||| ||||| ||||| ||||||||    
T  2905250 atcaaaataaaatattataagctacattactaccttgagtagatgttcagcacctcctcaacattgtctccattcacgacatctttcaatga 2905159  T

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Target: scaffold0627 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: scaffold0627
Description:

Target: scaffold0627; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 155 - 222
Target Start/End: Original strand, 4488 - 4555
Alignment:
Q  155 attctcaccttgagtggatattcagcacctcaatattgtctcctttcacaacatccttcaatgagatt 222  Q
    ||||| |||||||||||||||||| ||||||||||||||||||||||||  |||||||||||||||||    
T  4488 attcttaccttgagtggatattcaacacctcaatattgtctcctttcacggcatccttcaatgagatt 4555  T

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Target: chr6 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 155 - 222
Target Start/End: Original strand, 16716175 - 16716242
Alignment:
Q  155 attctcaccttgagtggatattcagcacctcaatattgtctcctttcacaacatccttcaatgagatt 222  Q
    ||||| |||||||||||||||||| |||||||||||| |||||||||||  |||||||||||||||||    
T  16716175 attcttaccttgagtggatattcaacacctcaatattctctcctttcacggcatccttcaatgagatt 16716242  T

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Target: chr4 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 161 - 218
Target Start/End: Original strand, 9442941 - 9442998
Alignment:
Q  161 accttgagtggatattcagcacctcaatattgtctcctttcacaacatccttcaatga 218  Q
    ||||||||||||||||||| |||||||||||| ||||||||| |||||||||||||||    
T  9442941 accttgagtggatattcagaacctcaatattgactcctttcaaaacatccttcaatga 9442998  T

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Target: chr1 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 161 - 212
Target Start/End: Original strand, 5130640 - 5130691
Alignment:
Q  161 accttgagtggatattcagcacctcaatattgtctcctttcacaacatcctt 212  Q
    |||||||||| |||||||||||||||||||||||||||||||||| ||||||    
T  5130640 accttgagtgaatattcagcacctcaatattgtctcctttcacaatatcctt 5130691  T

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Target: chr7 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 149 - 218
Target Start/End: Complemental strand, 48362138 - 48362069
Alignment:
Q  149 agctacattctcaccttgagtggatattcagcacctcaatattgtctcctttcacaacatccttcaatga 218  Q
    ||||||||||| |||||||||||| ||||| |||||| ||||| ||||||||||  ||||||||||||||    
T  48362138 agctacattcttaccttgagtggacattcaacacctccatattatctcctttcaagacatccttcaatga 48362069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 218
Target Start/End: Original strand, 35779694 - 35779728
Alignment:
Q  184 tcaatattgtctcctttcacaacatccttcaatga 218  Q
    ||||||||||||||||| |||||||||||||||||    
T  35779694 tcaatattgtctccttttacaacatccttcaatga 35779728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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