View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16521_low_86 (Length: 225)
Name: NF16521_low_86
Description: NF16521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16521_low_86 |
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Alignment Details
Target: chr3 (Bit Score: 144; Significance: 7e-76; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 20 - 208
Target Start/End: Complemental strand, 2834867 - 2834679
Alignment:
| Q |
20 |
tatgcgtctcagccaaccggtttcatccatccatcatttcctcaccaactatttatttaaaaattcaaagttagacacttcgctctactatcgnnnnnnn |
119 |
Q |
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| T |
2834867 |
tatgcgtctcagccaaccggtttcatccatccatcatttcctcaccaactatttatttaaaaattcaaagttagacacttcgctctactatcgttttttt |
2834768 |
T |
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| Q |
120 |
ngctaaccaagatcgatgctactatcgttttgaagccnnnnnnngtcttatactatctaaactggttgcctgcaccgggcctgatttca |
208 |
Q |
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| T |
2834767 |
tgctaaccaagatcgatgctactatcgttttgaagccaaaaaaagtcttatactatctaaactggttgcctgcaccgggcctgatttca |
2834679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 57 - 102
Target Start/End: Complemental strand, 2834666 - 2834621
Alignment:
| Q |
57 |
ttcctcaccaactatttatttaaaaattcaaagttagacacttcgc |
102 |
Q |
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| T |
2834666 |
ttcctcgccaactatttatttaaaaattcaaagtcagacacttcgc |
2834621 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 20 - 59
Target Start/End: Original strand, 2821494 - 2821533
Alignment:
| Q |
20 |
tatgcgtctcagccaaccggtttcatccatccatcatttc |
59 |
Q |
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| T |
2821494 |
tatgtgtctcagccaaccggtttcatccacccatcatttc |
2821533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 60 - 105
Target Start/End: Original strand, 2810124 - 2810169
Alignment:
| Q |
60 |
ctcaccaactatttatttaaaaattcaaagttagacacttcgctct |
105 |
Q |
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| T |
2810124 |
ctcaccgactatttatttataaattcaaagtcatacacttcgctct |
2810169 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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