View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16521_low_9 (Length: 573)
Name: NF16521_low_9
Description: NF16521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16521_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 478; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 478; E-Value: 0
Query Start/End: Original strand, 19 - 557
Target Start/End: Original strand, 43590346 - 43590885
Alignment:
| Q |
19 |
aagggggaaaaaagaagaaataaaatatcgtagcagtgcgatgaagtttcatttggtgctcccacgtatgatcctagcctgtgatctaatctcc-aattg |
117 |
Q |
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| T |
43590346 |
aagggggaaaaaagaagaaataaaatatcgtagcagtgtgatgaagtttcatttggtgctcccacgtatgatcctagcctgtgatctaatctcccaattg |
43590445 |
T |
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| Q |
118 |
cattcttgaaacatatctccacgaccttacatggggtcctttgtcaaggagcattagcaagccggcattgctagatggtagcccaaacatatacctacag |
217 |
Q |
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| T |
43590446 |
cattcttgaaacatatctccacgaccttacatggggtcctttgtcaaggagcattagcaagccggcgttgctagatggtagcccaaacatatacctacag |
43590545 |
T |
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| Q |
218 |
tcacaaggagttcagacagttgaatatttttgtcaaatacattcaaggttactttactcacttactctcnnnnnnncacaggttnnnnnnncagtaattg |
317 |
Q |
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| T |
43590546 |
tcacaaggagttcagacagttgaatatttttgtcaaatacattcaaggttactttactcacttactctctttttttcacaggttaaaaaaacagtaattg |
43590645 |
T |
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| Q |
318 |
tgccctctaaactcactaagaaaatgctagataaacataattgctagatacaacacaacaactttgttacttatagaaaatgcaccctattatatttgct |
417 |
Q |
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| T |
43590646 |
tgccctctaaactcactaagaaaatgctagataaacataattgctagatacaacacaacaactttgttacttatagaaaatgcaccctattataattgct |
43590745 |
T |
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| Q |
418 |
agatacaacacaacaactatgttatttatagaaagtgtttgtttgagaggccaatataaggatatggttagatttccatggaaactctgtcggtattcaa |
517 |
Q |
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| T |
43590746 |
agatacaacacaacaactatgttatttatagaaagtgtttgtttgagaggccaatataaggatatggttagatttccatggaaactctgtcggtattcaa |
43590845 |
T |
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| Q |
518 |
cggtaaaccttaatcagtaatcaccattgctgcaaattag |
557 |
Q |
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| T |
43590846 |
cggtaaaccttaatcagtaatcaccattgctgcaaattag |
43590885 |
T |
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