View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16521_low_91 (Length: 214)
Name: NF16521_low_91
Description: NF16521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16521_low_91 |
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Alignment Details
Target: chr7 (Bit Score: 174; Significance: 8e-94; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 174; E-Value: 8e-94
Query Start/End: Original strand, 1 - 200
Target Start/End: Original strand, 18488886 - 18489082
Alignment:
| Q |
1 |
atattatgttcaattagaatacaaatcttattaagtcacctgttttgatttgttctttaataaaagaatccatagtgagtaacaacagtcgttttataat |
100 |
Q |
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| T |
18488886 |
atattatgttcaattagaatacaaatcttattaagtcacttgttttgatttgttctttaataaaagaacccatagtgagtaacaacagtcgttttat--- |
18488982 |
T |
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| Q |
101 |
ttcattcatccatggtatgtttccaaaaacatagtagaattgtgtttaatgtatcatttgatatttacttcttatttttcattgtttgaaattttttctt |
200 |
Q |
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| T |
18488983 |
ttcattcatccatggtatgtttccgaaaacatagtagaattgtgtttaatgtatcatttgatatttacttcttatttttcattgtttgaaattttttctt |
18489082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 24 - 131
Target Start/End: Original strand, 18189461 - 18189565
Alignment:
| Q |
24 |
aatcttattaagtcacctgttttgatttgttctttaataaaagaatccatagtgagtaacaacagtcgttttataa--tttcattcatccatggtatgtt |
121 |
Q |
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| T |
18189461 |
aatcttattaagtcacttgttttgatttgttctttcatagaagaacctatagtgagtaacaacaatc-----ataatctctcattcatccatggtatgtt |
18189555 |
T |
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| Q |
122 |
tccaaaaaca |
131 |
Q |
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| T |
18189556 |
tcaaaaaaca |
18189565 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 16 - 90
Target Start/End: Original strand, 18207863 - 18207941
Alignment:
| Q |
16 |
agaatacaaatcttattaagt----cacctgttttgatttgttctttaataaaagaatccatagtgagtaacaacagtc |
90 |
Q |
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||||||||||||||||||||| ||| |||||||||||||||||| || ||||| | || |||||||||||||||| |
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| T |
18207863 |
agaatacaaatcttattaagttgatcacttgttttgatttgttctttcgtagaagaacctatcgtgagtaacaacagtc |
18207941 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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