View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16521_low_97 (Length: 211)
Name: NF16521_low_97
Description: NF16521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16521_low_97 |
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| [»] scaffold0568 (2 HSPs) |
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Alignment Details
Target: scaffold0568 (Bit Score: 134; Significance: 6e-70; HSPs: 2)
Name: scaffold0568
Description:
Target: scaffold0568; HSP #1
Raw Score: 134; E-Value: 6e-70
Query Start/End: Original strand, 14 - 191
Target Start/End: Complemental strand, 2622 - 2445
Alignment:
| Q |
14 |
gcaaaggtatacaaagacccaaaaactatctggaaaggcaaccatacaagaacaatgaccccctacgcataacgccgcatcaaacccagcacccaagcac |
113 |
Q |
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|||||||||||||||||||||||||||||| ||||||||| || |||||||||||||||||||| ||||||| ||||| |||||||||| ||||||||| |
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| T |
2622 |
gcaaaggtatacaaagacccaaaaactatccggaaaggcagccggacaagaacaatgaccccctatgcataacaccgcaccaaacccagcccccaagcac |
2523 |
T |
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| Q |
114 |
accaacacatgctgaaccgcaccacagaagctgctggcagcagcaaacaccgactgacagcaggtgcacacagcagca |
191 |
Q |
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| T |
2522 |
accaacacgtgctgaaccgcaccacagaagctgctggcagcagcaaacaccagctgacagcaggtgcacacagcagca |
2445 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0568; HSP #2
Raw Score: 134; E-Value: 6e-70
Query Start/End: Original strand, 14 - 191
Target Start/End: Complemental strand, 9224 - 9047
Alignment:
| Q |
14 |
gcaaaggtatacaaagacccaaaaactatctggaaaggcaaccatacaagaacaatgaccccctacgcataacgccgcatcaaacccagcacccaagcac |
113 |
Q |
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| T |
9224 |
gcaaaggtatacaaagacccaaaaactatccggaaaggcagccggacaagaacaatgaccccctatgcataacaccgcaccaaacccagcccccaagcac |
9125 |
T |
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| Q |
114 |
accaacacatgctgaaccgcaccacagaagctgctggcagcagcaaacaccgactgacagcaggtgcacacagcagca |
191 |
Q |
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| T |
9124 |
accaacacgtgctgaaccgcaccacagaagctgctggcagcagcaaacaccagctgacagcaggtgcacacagcagca |
9047 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 122; Significance: 9e-63; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 122; E-Value: 9e-63
Query Start/End: Original strand, 14 - 191
Target Start/End: Complemental strand, 17060646 - 17060470
Alignment:
| Q |
14 |
gcaaaggtatacaaagacccaaaaactatctggaaaggcaaccatacaagaacaatgaccccctacgcataacgccgcatcaaacccagcacccaagcac |
113 |
Q |
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|||||||||||||||||||||||| ||||| ||||||||| ||| |||||||||||||||||||| ||||||| ||||| |||||| ||| ||||| ||| |
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| T |
17060646 |
gcaaaggtatacaaagacccaaaa-ctatccggaaaggcagccagacaagaacaatgaccccctatgcataacaccgcaccaaaccaagcccccaaccac |
17060548 |
T |
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| Q |
114 |
accaacacatgctgaaccgcaccacagaagctgctggcagcagcaaacaccgactgacagcaggtgcacacagcagca |
191 |
Q |
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| T |
17060547 |
accaacacgtgctgaaccgcaccacagaagctgctggcagcagcaaacaccagctgacagcaggtgcacacagcagca |
17060470 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 108; Significance: 2e-54; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 14 - 149
Target Start/End: Complemental strand, 48224114 - 48223979
Alignment:
| Q |
14 |
gcaaaggtatacaaagacccaaaaactatctggaaaggcaaccatacaagaacaatgaccccctacgcataacgccgcatcaaacccagcacccaagcac |
113 |
Q |
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|||||||||||||||||||||||||||||| ||||||||| || |||||||||||||||||||||||||||||||||| |||||||||| ||||||||| |
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| T |
48224114 |
gcaaaggtatacaaagacccaaaaactatccggaaaggcagccggacaagaacaatgaccccctacgcataacgccgcaccaaacccagcccccaagcac |
48224015 |
T |
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| Q |
114 |
accaacacatgctgaaccgcaccacagaagctgctg |
149 |
Q |
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| T |
48224014 |
accaacacgtgctgaaccgcaccacagaagctgctg |
48223979 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 71 - 159
Target Start/End: Complemental strand, 36428032 - 36427944
Alignment:
| Q |
71 |
accccctacgcataacgccgcatcaaacccagcacccaagcacaccaacacatgctgaaccgcaccacagaagctgctggcagcagcaa |
159 |
Q |
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| T |
36428032 |
accccctacgcataccaccgcatcaaacccaacccccaaacacaccaaagcacacagacccgcaacacagcagctgctggcagcagcaa |
36427944 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.00000000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 75 - 121
Target Start/End: Original strand, 36616105 - 36616151
Alignment:
| Q |
75 |
cctacgcataacgccgcatcaaacccagcacccaagcacaccaacac |
121 |
Q |
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| T |
36616105 |
cctacgcataccgccgcatcaaccccagcccccaagcacaccaacac |
36616151 |
T |
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Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 67 - 177
Target Start/End: Complemental strand, 49571555 - 49571444
Alignment:
| Q |
67 |
aatgaccccctacgcataacgccgcatcaaacccagcacccaagcacaccaacacatgctgaaccgcaccacaga-agctgctggcagcagcaaacaccg |
165 |
Q |
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|||| ||||||||||||| || |||||||| ||||| ||| ||||| ||| | || ||||||| ||||||| ||||||||||||| || |||||| |
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| T |
49571555 |
aatggccccctacgcatacagctgcatcaaaaccagcccccttgcacaacaaaccgcgcagaaccgcgccacagatagctgctggcagctgctaacacca |
49571456 |
T |
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| Q |
166 |
actgacagcagg |
177 |
Q |
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| T |
49571455 |
actgacagcagg |
49571444 |
T |
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