View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16521_low_98 (Length: 209)
Name: NF16521_low_98
Description: NF16521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16521_low_98 |
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Alignment Details
Target: chr3 (Bit Score: 167; Significance: 1e-89; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 19 - 189
Target Start/End: Original strand, 47532600 - 47532770
Alignment:
| Q |
19 |
ctctatgtaaatttcaaacagtaatgtagctaaactttaatgcaggatttcaagcatgacccctagcttgtttagctcaaataaaaaacgaggtagaaat |
118 |
Q |
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| T |
47532600 |
ctctatgtaaatttcaaacagtaatgtagctaaactttaatgcaggatttcaagcatgacccctagcttgtttagctcaaataaaaaacgaggtagaaat |
47532699 |
T |
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| Q |
119 |
gttgacgatgaagagcgaaggcggaagcaaaggcgaatgctctgtatgaatatgattatggctgcagctgc |
189 |
Q |
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| T |
47532700 |
gatgacgatgaagagcgaaggcggaagcaaaggcgaatgctctgtatgaatatgattatggctgcagctgc |
47532770 |
T |
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Target: chr5 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 40 - 129
Target Start/End: Original strand, 39627100 - 39627189
Alignment:
| Q |
40 |
taatgtagctaaactttaatgcaggatttcaagcatgacccctagcttgtttagctcaaataaaaaacgaggtagaaatgttgacgatga |
129 |
Q |
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| T |
39627100 |
taatgtagttaaacattaatgcagactttcaagtatgacaactagcttgtttagttcaaataataaacgtggtagaaatgatgatgatga |
39627189 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 40 - 129
Target Start/End: Original strand, 39616378 - 39616467
Alignment:
| Q |
40 |
taatgtagctaaactttaatgcaggatttcaagcatgacccctagcttgtttagctcaaataaaaaacgaggtagaaatgttgacgatga |
129 |
Q |
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| T |
39616378 |
taatgtagtaaaacattaatgcagactttcaaatatgatgactagcttgtttagttcaaataaaaagcgtggtagaaatgatgatgatga |
39616467 |
T |
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