View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16522_low_1 (Length: 356)
Name: NF16522_low_1
Description: NF16522
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16522_low_1 |
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| [»] chr5 (1 HSPs) |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 323; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 14 - 356
Target Start/End: Complemental strand, 42464129 - 42463787
Alignment:
| Q |
14 |
atactagtaaattactaactttccaaagtaaaacgtagttaaagatgagcataacacaattataaaaccgattaaaaacgaaaaatataaagaggaaagc |
113 |
Q |
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| T |
42464129 |
atactagtaaattactaactttccaaagtaaaacgtagttcaagatgagcataacacaattataaaaccgattaaaaacaaaaaatataaagaggaaagc |
42464030 |
T |
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| Q |
114 |
taattgaaaacatagttaaggcaatgttatacctggaaccaattaggattctcaggactttgctgagcagcaagaacctcaacaaaaccttcatttttgt |
213 |
Q |
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| T |
42464029 |
taattgaaaacatagttaaggcaaagttatacctggaaccaattaggattctcaggactttgctgagcagcaagaacctcaacaaaaccttcatttttgt |
42463930 |
T |
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| Q |
214 |
agccaccgaggttgcttgcataagcacgagaaagatgtcgattgagggacgcagaattgaattgagtaagaacatagatcttcgatatgttgctgtttaa |
313 |
Q |
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| T |
42463929 |
agccaccgaggttgcttgcataagcacgagaaagatgtcgattgagggacgcagaattgaattgagtaagaacatagatcttagatatgttgctgtttaa |
42463830 |
T |
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| Q |
314 |
gcagttgctaacaggaatatcaatgagtctatagttagctcca |
356 |
Q |
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| T |
42463829 |
gcagttgctaacaggtatatcaatgagtctatagttagctcca |
42463787 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 86; Significance: 5e-41; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 143 - 356
Target Start/End: Complemental strand, 37078065 - 37077852
Alignment:
| Q |
143 |
tacctggaaccaattaggattctcaggactttgctgagcagcaagaacctcaacaaaaccttcatttttgtagccaccgaggttgcttgcataagcacga |
242 |
Q |
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| T |
37078065 |
tacctggaaccagtttggattctcaggactctgctgtgcagcaagaacctcaacgaaaccttcatttttgtaaccacccatgttgctcgcatatgcacgg |
37077966 |
T |
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| Q |
243 |
gaaagatgtcgattgagggacgcagaattgaattgagtaagaacatagatcttcgatatgttgctgtttaagcagttgctaacaggaatatcaatgagtc |
342 |
Q |
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| T |
37077965 |
gacaagtgcctattcaaggatgctgaattgaattgtgtgaggacgtagatctttgatatgttactgtttaggcagttgctgacagggatatcaatcagcc |
37077866 |
T |
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| Q |
343 |
tatagttagctcca |
356 |
Q |
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| T |
37077865 |
tatagtttgctcca |
37077852 |
T |
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