View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16523_high_12 (Length: 265)
Name: NF16523_high_12
Description: NF16523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16523_high_12 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 227; Significance: 1e-125; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 11 - 249
Target Start/End: Complemental strand, 14772122 - 14771884
Alignment:
| Q |
11 |
cacagactcataggtcgatctcttaagtatgcttcaggtatatcattttccaggttaacttgttaattgttcgttaagttccttttaactttgtatatta |
110 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14772122 |
cacagactcataggtcgatctcttatgtatgcttcaggtatatcattttccaggttaacttgttaattgttcgttaagttccttttaactttgtatatta |
14772023 |
T |
|
| Q |
111 |
aagttgttaaatctattatggtaactgaatccattatacacctgtattgcagttggagttgccgtgacgattgggatggttctgcgactgcaaggaagaa |
210 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
14772022 |
aagttgttaaatctattatggtaacttaatccattatacacctgtattgcagttggagttgccatgacgattgggatggttctgcgactgcaaggaagaa |
14771923 |
T |
|
| Q |
211 |
tgcgtcaaggaagaataacaaagaaacagacaataacat |
249 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14771922 |
tgcgtcaaggaagaataacaaagaaacagacaataacat |
14771884 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 11 - 136
Target Start/End: Complemental strand, 15014240 - 15014113
Alignment:
| Q |
11 |
cacagactcataggtcgatctcttaagtatgcttcaggtatatcattttccaggttaacttgtta-attgttcgttaagttccttttaactttgtatat- |
108 |
Q |
| |
|
||||||||||||| ||||||||||| || || ||||||||||| ||||| ||||| |||||||| || ||| |||| || ||||| ||||||||||| |
|
|
| T |
15014240 |
cacagactcatagatcgatctcttatgtttgtttcaggtatattattttttaggtttacttgttagtttcttcattaaattgcttttgactttgtatata |
15014141 |
T |
|
| Q |
109 |
taaagttgttaaatctattatggtaact |
136 |
Q |
| |
|
| ||||| || ||||||| ||| ||||| |
|
|
| T |
15014140 |
ttaagtttttcaatctatcatgctaact |
15014113 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 27 - 124
Target Start/End: Complemental strand, 17878844 - 17878747
Alignment:
| Q |
27 |
gatctcttaagtatgcttcaggtatatcattttccaggttaacttgttaattgttcgttaagttccttttaactttgtatattaaagttgttaaatct |
124 |
Q |
| |
|
|||||||| ||| || ||||||||||||| ||| || |||||||| |||||| ||||||||||||| ||||||||||||| |||| || ||||| |
|
|
| T |
17878844 |
gatctcttcagtttgtttcaggtatatcaattttagattttacttgttagttgttcattaagttccttttgactttgtatattagagtttttcaatct |
17878747 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University