View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16523_high_16 (Length: 203)

Name: NF16523_high_16
Description: NF16523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16523_high_16
NF16523_high_16
[»] chr4 (23 HSPs)
chr4 (88-178)||(35363968-35364057)
chr4 (1-90)||(11153495-11153583)
chr4 (1-90)||(12234438-12234526)
chr4 (1-90)||(46193753-46193841)
chr4 (1-90)||(51020906-51020994)
chr4 (9-88)||(45082547-45082625)
chr4 (1-87)||(12503787-12503872)
chr4 (1-87)||(18751953-18752038)
chr4 (9-90)||(2118644-2118724)
chr4 (1-90)||(15523582-15523670)
chr4 (9-90)||(22434526-22434606)
chr4 (1-87)||(4219666-4219751)
chr4 (1-90)||(23494552-23494640)
chr4 (9-90)||(25937787-25937867)
chr4 (1-76)||(22170299-22170373)
chr4 (1-60)||(33109793-33109852)
chr4 (1-87)||(38962171-38962255)
chr4 (1-62)||(25447611-25447672)
chr4 (22-90)||(17504103-17504170)
chr4 (9-88)||(48526312-48526390)
chr4 (1-90)||(54995416-54995504)
chr4 (34-90)||(17504308-17504363)
chr4 (34-90)||(35193449-35193504)
[»] scaffold0295 (1 HSPs)
scaffold0295 (1-90)||(4902-4990)
[»] chr6 (18 HSPs)
chr6 (1-90)||(15827989-15828077)
chr6 (1-90)||(10900278-10900366)
chr6 (1-90)||(11276930-11277018)
chr6 (1-90)||(23074097-23074185)
chr6 (1-87)||(12935508-12935593)
chr6 (1-90)||(11445096-11445184)
chr6 (1-90)||(20741209-20741297)
chr6 (9-90)||(28472753-28472833)
chr6 (9-90)||(29859942-29860022)
chr6 (1-90)||(31470664-31470752)
chr6 (1-90)||(2322567-2322654)
chr6 (1-90)||(18257246-18257334)
chr6 (1-87)||(1149782-1149868)
chr6 (1-90)||(18505267-18505355)
chr6 (22-90)||(35163535-35163602)
chr6 (34-88)||(32836348-32836401)
chr6 (1-54)||(4811481-4811534)
chr6 (1-41)||(2319781-2319821)
[»] chr5 (19 HSPs)
chr5 (1-90)||(2865103-2865191)
chr5 (1-90)||(24362184-24362272)
chr5 (2-90)||(164539-164626)
chr5 (1-86)||(18183321-18183405)
chr5 (1-90)||(19359245-19359333)
chr5 (1-90)||(5819277-5819365)
chr5 (1-90)||(8461039-8461127)
chr5 (1-90)||(8647547-8647635)
chr5 (9-90)||(14215591-14215671)
chr5 (9-90)||(16018704-16018784)
chr5 (1-90)||(24331908-24331996)
chr5 (1-90)||(29455090-29455178)
chr5 (2-90)||(25000200-25000287)
chr5 (9-88)||(15709087-15709165)
chr5 (9-90)||(24325559-24325639)
chr5 (43-90)||(41834398-41834444)
chr5 (22-87)||(32305947-32306011)
chr5 (1-41)||(24325321-24325361)
chr5 (1-41)||(24361946-24361986)
[»] chr3 (24 HSPs)
chr3 (1-90)||(25853575-25853663)
chr3 (1-90)||(5137089-5137177)
chr3 (1-90)||(23644571-23644659)
chr3 (1-90)||(24300904-24300992)
chr3 (1-90)||(39555925-39556013)
chr3 (1-90)||(41046809-41046897)
chr3 (2-90)||(26837704-26837791)
chr3 (1-87)||(37727038-37727123)
chr3 (1-90)||(26274915-26275003)
chr3 (3-90)||(27393925-27394011)
chr3 (1-90)||(22425161-22425249)
chr3 (2-90)||(17464839-17464926)
chr3 (1-90)||(31779000-31779088)
chr3 (1-87)||(20840669-20840754)
chr3 (1-90)||(43973550-43973637)
chr3 (9-90)||(30104598-30104678)
chr3 (34-90)||(33412355-33412411)
chr3 (34-90)||(37847169-37847224)
chr3 (22-90)||(49407925-49407992)
chr3 (8-90)||(29801532-29801613)
chr3 (9-90)||(32535307-32535387)
chr3 (1-41)||(48453098-48453138)
chr3 (34-90)||(55192259-55192314)
chr3 (38-90)||(27199848-27199899)
[»] chr7 (13 HSPs)
chr7 (2-90)||(29100199-29100286)
chr7 (3-90)||(19590636-19590722)
chr7 (3-90)||(2659188-2659274)
chr7 (1-88)||(19830529-19830615)
chr7 (1-83)||(37786876-37786957)
chr7 (1-90)||(32004962-32005050)
chr7 (1-90)||(34534139-34534227)
chr7 (13-90)||(4478049-4478124)
chr7 (1-86)||(23953082-23953165)
chr7 (1-90)||(4641549-4641637)
chr7 (1-90)||(35289249-35289337)
chr7 (2-87)||(38858753-38858837)
chr7 (37-90)||(35579235-35579287)
[»] chr2 (15 HSPs)
chr2 (2-88)||(14432252-14432337)
chr2 (1-90)||(239461-239549)
chr2 (1-90)||(11090630-11090718)
chr2 (1-90)||(40815693-40815781)
chr2 (5-90)||(43058446-43058530)
chr2 (2-90)||(40027250-40027337)
chr2 (1-90)||(26538206-26538294)
chr2 (3-90)||(18451179-18451265)
chr2 (9-90)||(1978225-1978305)
chr2 (1-87)||(28616722-28616808)
chr2 (1-90)||(8425709-8425796)
chr2 (9-90)||(3025582-3025662)
chr2 (1-90)||(22374429-22374517)
chr2 (9-90)||(7446458-7446542)
chr2 (34-87)||(28143382-28143434)
[»] scaffold0273 (1 HSPs)
scaffold0273 (1-90)||(4555-4643)
[»] chr8 (14 HSPs)
chr8 (1-90)||(13224749-13224837)
chr8 (1-90)||(31133329-31133417)
chr8 (2-87)||(44831596-44831680)
chr8 (3-90)||(4630140-4630226)
chr8 (1-90)||(9930005-9930093)
chr8 (1-90)||(33743267-33743355)
chr8 (7-90)||(12571979-12572061)
chr8 (9-88)||(41681250-41681328)
chr8 (1-87)||(19176641-19176726)
chr8 (9-90)||(9177984-9178064)
chr8 (1-90)||(33328267-33328355)
chr8 (22-90)||(18805292-18805359)
chr8 (1-87)||(11656564-11656650)
chr8 (62-90)||(42036120-42036148)
[»] chr1 (18 HSPs)
chr1 (1-90)||(50970626-50970714)
chr1 (1-90)||(5540167-5540254)
chr1 (1-87)||(5962929-5963014)
chr1 (1-90)||(29307062-29307149)
chr1 (1-90)||(15173205-15173293)
chr1 (1-90)||(21856391-21856479)
chr1 (1-90)||(29869729-29869817)
chr1 (3-90)||(17433327-17433413)
chr1 (1-90)||(9019082-9019170)
chr1 (1-90)||(18984228-18984316)
chr1 (1-90)||(33144267-33144355)
chr1 (5-90)||(4636085-4636169)
chr1 (1-90)||(26859408-26859495)
chr1 (1-90)||(39154128-39154216)
chr1 (34-90)||(17088488-17088544)
chr1 (12-90)||(8678890-8678967)
chr1 (1-87)||(15646543-15646631)
chr1 (36-87)||(45048298-45048348)
[»] scaffold1223 (1 HSPs)
scaffold1223 (1-90)||(861-949)
[»] scaffold0019 (1 HSPs)
scaffold0019 (1-90)||(134021-134109)
[»] scaffold0157 (1 HSPs)
scaffold0157 (1-87)||(16605-16690)
[»] scaffold0417 (1 HSPs)
scaffold0417 (1-90)||(10730-10818)
[»] scaffold0176 (1 HSPs)
scaffold0176 (9-90)||(18951-19030)
[»] scaffold0951 (1 HSPs)
scaffold0951 (1-90)||(1776-1864)
[»] scaffold0027 (1 HSPs)
scaffold0027 (9-90)||(42507-42587)
[»] scaffold0432 (1 HSPs)
scaffold0432 (9-90)||(10221-10301)
[»] scaffold0007 (3 HSPs)
scaffold0007 (1-62)||(64411-64472)
scaffold0007 (22-89)||(205718-205784)
scaffold0007 (47-87)||(205105-205145)


Alignment Details
Target: chr4 (Bit Score: 63; Significance: 1e-27; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 88 - 178
Target Start/End: Original strand, 35363968 - 35364057
Alignment:
Q  88 ggagatgtatcccatcctgtgatgatggtcggtgggtggcaaagggggcagcgttgtggttcttcctcatgtcattctagctatccagatg 178  Q
    ||||||| |||||||||| ||||| ||||||||||||||||||||||||| ||||| ||||||||||||||||| ||||||||||||||||    
T  35363968 ggagatgcatcccatcctatgatgctggtcggtgggtggcaaagggggcaccgttgcggttcttcctcatgtca-tctagctatccagatg 35364057  T

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Target: chr4; HSP #2
Raw Score: 62; E-Value: 5e-27
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 11153583 - 11153495
Alignment:
Q  1 cgtcctaccccccattttattctccaaaaacatagagaaataacaattttagacttacccccctatactcaaccatgaaataaacaagga 90  Q
    |||||||||| ||||||||||||||||||||  |||||||||||| |||||||||||| ||||||| |||||||||||||||||||||||    
T  11153583 cgtcctaccctccattttattctccaaaaacgcagagaaataacagttttagacttac-cccctatgctcaaccatgaaataaacaagga 11153495  T

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Target: chr4; HSP #3
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 12234438 - 12234526
Alignment:
Q  1 cgtcctaccccccattttattctccaaaaacatagagaaataacaattttagacttacccccctatactcaaccatgaaataaacaagga 90  Q
    |||||||||||||||||||||||||||||||  |||||||||||| ||||| || || |||||||| |||||||||||||||||||||||    
T  12234438 cgtcctaccccccattttattctccaaaaacgcagagaaataacagttttaaaccta-ccccctatgctcaaccatgaaataaacaagga 12234526  T

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Target: chr4; HSP #4
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 46193841 - 46193753
Alignment:
Q  1 cgtcctaccccccattttattctccaaaaacatagagaaataacaattttagacttacccccctatactcaaccatgaaataaacaagga 90  Q
    ||||||||||||||||||||||||||||||| ||||||| | ||| |||||||| || |||||||| |||||||||||||||||||||||    
T  46193841 cgtcctaccccccattttattctccaaaaacgtagagaattgacagttttagaccta-ccccctatgctcaaccatgaaataaacaagga 46193753  T

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Target: chr4; HSP #5
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 51020906 - 51020994
Alignment:
Q  1 cgtcctaccccccattttattctccaaaaacatagagaaataacaattttagacttacccccctatactcaaccatgaaataaacaagga 90  Q
    ||||||||||||||||||||||| ||||||| ||||||||| ||| |||||||| || |||||||| |||||||||||||||||||||||    
T  51020906 cgtcctaccccccattttattcttcaaaaacgtagagaaatgacagttttagaccta-ccccctatgctcaaccatgaaataaacaagga 51020994  T

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Target: chr4; HSP #6
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 9 - 88
Target Start/End: Original strand, 45082547 - 45082625
Alignment:
Q  9 cccccattttattctccaaaaacatagagaaataacaattttagacttacccccctatactcaaccatgaaataaacaag 88  Q
    |||||||||||||||||||||||| |||||||| |||||||||||| || |||||||| ||||| |||||||||||||||    
T  45082547 cccccattttattctccaaaaacacagagaaatgacaattttagaccta-ccccctatgctcaatcatgaaataaacaag 45082625  T

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Target: chr4; HSP #7
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 12503872 - 12503787
Alignment:
Q  1 cgtcctaccccccattttattctccaaaaacatagagaaataacaattttagacttacccccctatactcaaccatgaaataaacaa 87  Q
    |||| ||||||||||||||||||||||||||  |||||||| ||| |||||||| || |||||||| ||||||||||||||||||||    
T  12503872 cgtcataccccccattttattctccaaaaacgcagagaaatgacagttttagaccta-ccccctatgctcaaccatgaaataaacaa 12503787  T

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Target: chr4; HSP #8
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 18752038 - 18751953
Alignment:
Q  1 cgtcctaccccccattttattctccaaaaacatagagaaataacaattttagacttacccccctatactcaaccatgaaataaacaa 87  Q
    |||||||||||| |||||||||||||||||   |||||||||||| |||||||| || |||||||| ||||||||||||||||||||    
T  18752038 cgtcctaccccctattttattctccaaaaatgcagagaaataacagttttagaccta-ccccctatgctcaaccatgaaataaacaa 18751953  T

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Target: chr4; HSP #9
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 9 - 90
Target Start/End: Complemental strand, 2118724 - 2118644
Alignment:
Q  9 cccccattttattctccaaaaacatagagaaataacaattttagacttacccccctatactcaaccatgaaataaacaagga 90  Q
    |||||||||||||||||||||||  |||||||||| | |||||||| || |||||||| |||||||||||||||||||||||    
T  2118724 cccccattttattctccaaaaacgcagagaaataatagttttagaccta-ccccctatgctcaaccatgaaataaacaagga 2118644  T

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Target: chr4; HSP #10
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 15523670 - 15523582
Alignment:
Q  1 cgtcctaccccccattttattctccaaaaacatagagaaataacaattttagacttacccccctatactcaaccatgaaataaacaagga 90  Q
    |||||||||||||||||||||||||||||||  | |||||| ||| |||||||| || |||||||| || ||||||||||||||||||||    
T  15523670 cgtcctaccccccattttattctccaaaaacgcaaagaaatgacagttttagaccta-ccccctatgcttaaccatgaaataaacaagga 15523582  T

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Target: chr4; HSP #11
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 9 - 90
Target Start/End: Complemental strand, 22434606 - 22434526
Alignment:
Q  9 cccccattttattctccaaaaacatagagaaataacaattttagacttacccccctatactcaaccatgaaataaacaagga 90  Q
    |||||||||||||||||||||||  |||||||| ||| |||||||| || |||||||| |||||||||||||||||||||||    
T  22434606 cccccattttattctccaaaaacgcagagaaatgacagttttagaccta-ccccctatgctcaaccatgaaataaacaagga 22434526  T

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Target: chr4; HSP #12
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 4219666 - 4219751
Alignment:
Q  1 cgtcctaccccccattttattctccaaaaacatagagaaataacaattttagacttacccccctatactcaaccatgaaataaacaa 87  Q
    |||||||||||||||||||||||||||||||  |||||||| ||| ||||| || ||  ||||||| ||||||||||||||||||||    
T  4219666 cgtcctaccccccattttattctccaaaaacgcagagaaatgacagttttaaaccta-tcccctatgctcaaccatgaaataaacaa 4219751  T

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Target: chr4; HSP #13
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 23494552 - 23494640
Alignment:
Q  1 cgtcctaccccccattttattctccaaaaacatagagaaataacaattttagacttacccccctatactcaaccatgaaataaacaagga 90  Q
    |||||||||||||||||||||||||||| ||  |||||||| ||| |||||||| || || | ||| |||||||||||||||||||||||    
T  23494552 cgtcctaccccccattttattctccaaacacgcagagaaatgacagttttagaccta-cctcatatgctcaaccatgaaataaacaagga 23494640  T

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Target: chr4; HSP #14
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 9 - 90
Target Start/End: Original strand, 25937787 - 25937867
Alignment:
Q  9 cccccattttattctccaaaaacatagagaaataacaattttagacttacccccctatactcaaccatgaaataaacaagga 90  Q
    |||||||||||||||||||||||  |||||||| ||| |||||||| || |||| ||| |||||||||||||||||||||||    
T  25937787 cccccattttattctccaaaaacgcagagaaatgacagttttagaccta-ccccatatgctcaaccatgaaataaacaagga 25937867  T

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Target: chr4; HSP #15
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 22170373 - 22170299
Alignment:
Q  1 cgtcctaccccccattttattctccaaaaacatagagaaataacaattttagacttacccccctatactcaaccat 76  Q
    |||||||||||||||||||||||||||||||  |||||||| ||| |||||||| || |||||||| |||||||||    
T  22170373 cgtcctaccccccattttattctccaaaaacgcagagaaatgacagttttagacgta-ccccctatgctcaaccat 22170299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 33109793 - 33109852
Alignment:
Q  1 cgtcctaccccccattttattctccaaaaacatagagaaataacaattttagacttaccc 60  Q
    |||||||||||||||||||||||||||||||  |||||||| ||| |||||||| |||||    
T  33109793 cgtcctaccccccattttattctccaaaaacgcagagaaatgacagttttagacctaccc 33109852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 38962255 - 38962171
Alignment:
Q  1 cgtcctaccccccattttattctccaaaaacatagagaaataacaattttagacttacccccctatactcaaccatgaaataaacaa 87  Q
    ||||||||||||||||||||||| |||||||  |||||||| ||| |||||||| ||  ||||||| |||||| || ||||||||||    
T  38962255 cgtcctaccccccattttattcttcaaaaacgcagagaaatgacagttttagaccta--cccctatgctcaactataaaataaacaa 38962171  T

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Target: chr4; HSP #18
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 25447672 - 25447611
Alignment:
Q  1 cgtcctaccccccattttattctccaaaaacatagagaaataacaattttagacttaccccc 62  Q
    |||||||||| ||||||||||||||||||||  |||||||| ||| |||||||| |||||||    
T  25447672 cgtcctaccctccattttattctccaaaaacgcagagaaattacagttttagacctaccccc 25447611  T

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Target: chr4; HSP #19
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 22 - 90
Target Start/End: Original strand, 17504103 - 17504170
Alignment:
Q  22 ctccaaaaacatagagaaataacaattttagacttacccccctatactcaaccatgaaataaacaagga 90  Q
    ||||| |||| ||||||||| ||| |||||||| ||||||| ||| |||||||||||||||||||||||    
T  17504103 ctccagaaacgtagagaaatgacagttttagacctaccccc-tatgctcaaccatgaaataaacaagga 17504170  T

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Target: chr4; HSP #20
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 9 - 88
Target Start/End: Original strand, 48526312 - 48526390
Alignment:
Q  9 cccccattttattctccaaaaacatagagaaataacaattttagacttacccccctatactcaaccatgaaataaacaag 88  Q
    ||||||||||||||||||||||   |||||||| ||| |||||||  || |||||||| ||||||| |||||||||||||    
T  48526312 cccccattttattctccaaaaatgcagagaaatgacagttttagatcta-ccccctatgctcaaccttgaaataaacaag 48526390  T

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Target: chr4; HSP #21
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 54995504 - 54995416
Alignment:
Q  1 cgtcctaccccccattttattctccaaaaacatagagaaataacaattttagacttacccccctatactcaaccatgaaataaacaagga 90  Q
    ||||||| |||||||||||||||| ||||||  | |||||| | | |||||||| || || ||||| |||||| ||||||||||||||||    
T  54995504 cgtcctaacccccattttattctctaaaaacgcaaagaaatgatagttttagaccta-ccacctatgctcaactatgaaataaacaagga 54995416  T

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Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 34 - 90
Target Start/End: Complemental strand, 17504363 - 17504308
Alignment:
Q  34 agagaaataacaattttagacttacccccctatactcaaccatgaaataaacaagga 90  Q
    |||||||| ||| |||||||| ||||||| ||| |||||||||||||||||||||||    
T  17504363 agagaaatgacagttttagacctaccccc-tatgctcaaccatgaaataaacaagga 17504308  T

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Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 34 - 90
Target Start/End: Original strand, 35193449 - 35193504
Alignment:
Q  34 agagaaataacaattttagacttacccccctatactcaaccatgaaataaacaagga 90  Q
    |||||||| ||| |||||||| ||||||| ||| |||||||||||||||||||||||    
T  35193449 agagaaatgacagttttagacctaccccc-tatgctcaaccatgaaataaacaagga 35193504  T

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Target: scaffold0295 (Bit Score: 62; Significance: 5e-27; HSPs: 1)
Name: scaffold0295
Description:

Target: scaffold0295; HSP #1
Raw Score: 62; E-Value: 5e-27
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 4902 - 4990
Alignment:
Q  1 cgtcctaccccccattttattctccaaaaacatagagaaataacaattttagacttacccccctatactcaaccatgaaataaacaagga 90  Q
    |||||||||||||||||||||||||||||||  |||||||||||| |||||||| || |||||||| |||||||||||||||||||||||    
T  4902 cgtcctaccccccattttattctccaaaaacgcagagaaataacagttttagaccta-ccccctatgctcaaccatgaaataaacaagga 4990  T

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Target: chr6 (Bit Score: 62; Significance: 5e-27; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 62; E-Value: 5e-27
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 15828077 - 15827989
Alignment:
Q  1 cgtcctaccccccattttattctccaaaaacatagagaaataacaattttagacttacccccctatactcaaccatgaaataaacaagga 90  Q
    |||||||||||||||||||||||||||||||  |||||||||||| |||||||| || |||||||| |||||||||||||||||||||||    
T  15828077 cgtcctaccccccattttattctccaaaaacgcagagaaataacagttttagaccta-ccccctatgctcaaccatgaaataaacaagga 15827989  T

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Target: chr6; HSP #2
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 10900366 - 10900278
Alignment:
Q  1 cgtcctaccccccattttattctccaaaaacatagagaaataacaattttagacttacccccctatactcaaccatgaaataaacaagga 90  Q
    |||||||||||||||||||||||||||||||  |||||||| ||| |||||||| || |||||||| |||||||||||||||||||||||    
T  10900366 cgtcctaccccccattttattctccaaaaacgcagagaaatgacagttttagaccta-ccccctatgctcaaccatgaaataaacaagga 10900278  T

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Target: chr6; HSP #3
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 11277018 - 11276930
Alignment:
Q  1 cgtcctaccccccattttattctccaaaaacatagagaaataacaattttagacttacccccctatactcaaccatgaaataaacaagga 90  Q
    |||||||||||||||||||||||||||||||  |||||||| ||| |||||||| || |||||||| |||||||||||||||||||||||    
T  11277018 cgtcctaccccccattttattctccaaaaacgaagagaaatgacagttttagaccta-ccccctatgctcaaccatgaaataaacaagga 11276930  T

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Target: chr6; HSP #4
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 23074097 - 23074185
Alignment:
Q  1 cgtcctaccccccattttattctccaaaaacatagagaaataacaattttagacttacccccctatactcaaccatgaaataaacaagga 90  Q
    |||||||||||||||||||||||||||||||  |||||||||||| |||||||| || ||  |||| |||||||||||||||||||||||    
T  23074097 cgtcctaccccccattttattctccaaaaacgcagagaaataacagttttagaccta-ccttctatgctcaaccatgaaataaacaagga 23074185  T

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Target: chr6; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 12935593 - 12935508
Alignment:
Q  1 cgtcctaccccccattttattctccaaaaacatagagaaataacaattttagacttacccccctatactcaaccatgaaataaacaa 87  Q
    |||||||||||||||||||||||||| ||||| |||||||| ||| |||||||| || ||||||||  |||||||||||||||||||    
T  12935593 cgtcctaccccccattttattctccataaacacagagaaatgacagttttagaccta-ccccctatgttcaaccatgaaataaacaa 12935508  T

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Target: chr6; HSP #6
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 11445096 - 11445184
Alignment:
Q  1 cgtcctaccccccattttattctccaaaaacatagagaaataacaattttagacttacccccctatactcaaccatgaaataaacaagga 90  Q
    |||||||||| ||||||||||||| ||||||| |||||||| ||| |||||||| || |||||||| |||| ||||||||||||||||||    
T  11445096 cgtcctaccctccattttattctctaaaaacacagagaaatgacagttttagaccta-ccccctatgctcatccatgaaataaacaagga 11445184  T

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Target: chr6; HSP #7
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 20741209 - 20741297
Alignment:
Q  1 cgtcctaccccccattttattctccaaaaacatagagaaataacaattttagacttacccccctatactcaaccatgaaataaacaagga 90  Q
    |||||||||||||||||||||||||||||||  |||||||| ||| |||||||| || |||||||| || | ||||||||||||||||||    
T  20741209 cgtcctaccccccattttattctccaaaaacgcagagaaatgacagttttagaccta-ccccctatgcttagccatgaaataaacaagga 20741297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 9 - 90
Target Start/End: Original strand, 28472753 - 28472833
Alignment:
Q  9 cccccattttattctccaaaaacatagagaaataacaattttagacttacccccctatactcaaccatgaaataaacaagga 90  Q
    |||||||||||||||||||||||  |||||||| ||| |||||||| || |||||||| |||||||||||||||||||||||    
T  28472753 cccccattttattctccaaaaacgcagagaaatgacagttttagaccta-ccccctatgctcaaccatgaaataaacaagga 28472833  T

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Target: chr6; HSP #9
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 9 - 90
Target Start/End: Original strand, 29859942 - 29860022
Alignment:
Q  9 cccccattttattctccaaaaacatagagaaataacaattttagacttacccccctatactcaaccatgaaataaacaagga 90  Q
    |||||||||||||||||||||||  |||||||| ||| |||||||| || |||||||| |||||||||||||||||||||||    
T  29859942 cccccattttattctccaaaaacgcagagaaatgacagttttagaccta-ccccctatgctcaaccatgaaataaacaagga 29860022  T

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Target: chr6; HSP #10
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 31470752 - 31470664
Alignment:
Q  1 cgtcctaccccccattttattctccaaaaacatagagaaataacaattttagacttacccccctatactcaaccatgaaataaacaagga 90  Q
    |||||||||||||||||||||||||||||||  |||||||| |||||||||||  || |||| ||| ||||| |||||||||||||||||    
T  31470752 cgtcctaccccccattttattctccaaaaacgcagagaaatgacaattttagatcta-ccccttatgctcaatcatgaaataaacaagga 31470664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 2322654 - 2322567
Alignment:
Q  1 cgtcctaccccccattttattctccaaaaacatagagaaataacaattttagacttacccccctatactcaaccatgaaataaacaagga 90  Q
    ||||||||||| ||||||||||||||||| || |||||||| ||| |||||||| | ||||| ||| |||||||||||||||||||||||    
T  2322654 cgtcctacccctcattttattctccaaaa-cacagagaaatgacagttttagaccttccccc-tatgctcaaccatgaaataaacaagga 2322567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 18257246 - 18257334
Alignment:
Q  1 cgtcctaccccccattttattctccaaaaacatagagaaataacaattttagacttacccccctatactcaaccatgaaataaacaagga 90  Q
    |||| ||||||||||||||||||||||||||  |||||||| ||| |||||||| || ||| |||| |||||||||||||| ||||||||    
T  18257246 cgtcataccccccattttattctccaaaaacgcagagaaatgacagttttagaccta-ccctctatgctcaaccatgaaattaacaagga 18257334  T

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Target: chr6; HSP #13
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 1149868 - 1149782
Alignment:
Q  1 cgtcctaccccccattttattctcca-aaaacatagagaaataacaattttagacttacccccctatactcaaccatgaaataaacaa 87  Q
    |||||||||||||||||||||||||| |||||  |||||||| ||| |||||||| || ||||||||  |||||||||||||||||||    
T  1149868 cgtcctaccccccattttattctccaaaaaacgcagagaaatgacagttttagaccta-ccccctatgttcaaccatgaaataaacaa 1149782  T

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Target: chr6; HSP #14
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 18505355 - 18505267
Alignment:
Q  1 cgtcctaccccccattttattctccaaaaacatagagaaataacaattttagacttacccccctatactcaaccatgaaataaacaagga 90  Q
    ||||||||||||||||||||||||||| |||  |||||||| ||| ||||| |  ||  ||||||| |||||||||||||||||||||||    
T  18505355 cgtcctaccccccattttattctccaacaacgaagagaaatgacagttttaaatcta-acccctatgctcaaccatgaaataaacaagga 18505267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 90
Target Start/End: Complemental strand, 35163602 - 35163535
Alignment:
Q  22 ctccaaaaacatagagaaataacaattttagacttacccccctatactcaaccatgaaataaacaagga 90  Q
    ||||||||||| |||||||| ||| |||||| | ||||||| ||| | |||||||||||||||||||||    
T  35163602 ctccaaaaacacagagaaatgacagttttaggcctaccccc-tatgcccaaccatgaaataaacaagga 35163535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 88
Target Start/End: Complemental strand, 32836401 - 32836348
Alignment:
Q  34 agagaaataacaattttagacttacccccctatactcaaccatgaaataaacaag 88  Q
    |||||||||||| |||||||| ||||||  ||| |||||||||||||||||||||    
T  32836401 agagaaataacagttttagacctacccct-tatgctcaaccatgaaataaacaag 32836348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 4811481 - 4811534
Alignment:
Q  1 cgtcctaccccccattttattctccaaaaacatagagaaataacaattttagac 54  Q
    |||| |||||||||||||||||| |||||||  ||| |||||||| ||||||||    
T  4811481 cgtcttaccccccattttattcttcaaaaacgcagataaataacagttttagac 4811534  T

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Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 2319781 - 2319821
Alignment:
Q  1 cgtcctaccccccattttattctccaaaaacatagagaaat 41  Q
    |||||||||||||||||||||||||| ||||  ||||||||    
T  2319781 cgtcctaccccccattttattctccagaaacgcagagaaat 2319821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 62; Significance: 5e-27; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 62; E-Value: 5e-27
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 2865191 - 2865103
Alignment:
Q  1 cgtcctaccccccattttattctccaaaaacatagagaaataacaattttagacttacccccctatactcaaccatgaaataaacaagga 90  Q
    ||||||||||||||||||||||||||||||| ||||||||| ||| |||||||| || |||||||| |||||||||||||||||||||||    
T  2865191 cgtcctaccccccattttattctccaaaaacgtagagaaatgacagttttagaccta-ccccctatgctcaaccatgaaataaacaagga 2865103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 24362272 - 24362184
Alignment:
Q  1 cgtcctaccccccattttattctccaaaaacatagagaaataacaattttagacttacccccctatactcaaccatgaaataaacaagga 90  Q
    |||||||||||||||||||||||||||||||  |||||||| ||| |||||||||||  ||||||| |||||||||||||||||||||||    
T  24362272 cgtcctaccccccattttattctccaaaaacgcagagaaatgacagttttagactta-tcccctatgctcaaccatgaaataaacaagga 24362184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 2 - 90
Target Start/End: Complemental strand, 164626 - 164539
Alignment:
Q  2 gtcctaccccccattttattctccaaaaacatagagaaataacaattttagacttacccccctatactcaaccatgaaataaacaagga 90  Q
    |||||||||||||||||||||||||||||  ||||||||| ||| |||||||| || |||||||| |||||||||||||||||||||||    
T  164626 gtcctaccccccattttattctccaaaaatgtagagaaatgacagttttagaccta-ccccctatgctcaaccatgaaataaacaagga 164539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 18183405 - 18183321
Alignment:
Q  1 cgtcctaccccccattttattctccaaaaacatagagaaataacaattttagacttacccccctatactcaaccatgaaataaaca 86  Q
    ||||||||||| |||||||||||||||||||  |||||||||||| |||||||| || |||||||| |||||||||||||||||||    
T  18183405 cgtcctacccctcattttattctccaaaaacgcagagaaataacagttttagaccta-ccccctatgctcaaccatgaaataaaca 18183321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 19359245 - 19359333
Alignment:
Q  1 cgtcctaccccccattttattctccaaaaacatagagaaataacaattttagacttacccccctatactcaaccatgaaataaacaagga 90  Q
    |||||||||||||||||||||||||||||||  |||||||| ||| || ||||| || |||||||| |||||||||||||||||||||||    
T  19359245 cgtcctaccccccattttattctccaaaaacgcagagaaatgacagttctagaccta-ccccctatgctcaaccatgaaataaacaagga 19359333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 5819365 - 5819277
Alignment:
Q  1 cgtcctaccccccattttattctccaaaaacatagagaaataacaattttagacttacccccctatactcaaccatgaaataaacaagga 90  Q
    |||||||||||||||||||||||||||||||  | |||||| ||| |||||||  || |||||||| |||||||||||||||||||||||    
T  5819365 cgtcctaccccccattttattctccaaaaacgcaaagaaatgacagttttagatcta-ccccctatgctcaaccatgaaataaacaagga 5819277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 8461039 - 8461127
Alignment:
Q  1 cgtcctaccccccattttattctccaaaaacatagagaaataacaattttagacttacccccctatactcaaccatgaaataaacaagga 90  Q
    |||| |||||||||||||||||||||||||   |||||||| ||| |||||||| || |||||||| |||||||||||||||||||||||    
T  8461039 cgtcataccccccattttattctccaaaaatgcagagaaatgacagttttagaccta-ccccctatgctcaaccatgaaataaacaagga 8461127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 8647547 - 8647635
Alignment:
Q  1 cgtcctaccccccattttattctccaaaaacatagagaaataacaattttagacttacccccctatactcaaccatgaaataaacaagga 90  Q
    |||||||||||||||||||||||||||||||  |||||||| ||| |||||||| || ||| |||| |||| ||||||||||||||||||    
T  8647547 cgtcctaccccccattttattctccaaaaacgcagagaaatgacagttttagaccta-ccctctatgctcatccatgaaataaacaagga 8647635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 9 - 90
Target Start/End: Complemental strand, 14215671 - 14215591
Alignment:
Q  9 cccccattttattctccaaaaacatagagaaataacaattttagacttacccccctatactcaaccatgaaataaacaagga 90  Q
    ||||||||||||||||||||||| ||||||||| ||| |||||||| || |||||||  |||||||||||||||||||||||    
T  14215671 cccccattttattctccaaaaacgtagagaaatgacagttttagaccta-ccccctaagctcaaccatgaaataaacaagga 14215591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 9 - 90
Target Start/End: Original strand, 16018704 - 16018784
Alignment:
Q  9 cccccattttattctccaaaaacatagagaaataacaattttagacttacccccctatactcaaccatgaaataaacaagga 90  Q
    |||||||||||||||||||||| ||||| |||| ||| |||||||| || |||||||| |||||||||||||||||||||||    
T  16018704 cccccattttattctccaaaaatatagaaaaatgacagttttagaccta-ccccctatgctcaaccatgaaataaacaagga 16018784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 24331996 - 24331908
Alignment:
Q  1 cgtcctaccccccattttattctccaaaaacatagagaaataacaattttagacttacccccctatactcaaccatgaaataaacaagga 90  Q
    |||||||||||||||| ||||||||||||||  |||||||| ||| |||||||| ||  ||||||| |||||||||||||||||||||||    
T  24331996 cgtcctaccccccattctattctccaaaaacgcagagaaatgacagttttagaccta-tcccctatgctcaaccatgaaataaacaagga 24331908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 29455178 - 29455090
Alignment:
Q  1 cgtcctaccccccattttattctccaaaaacatagagaaataacaattttagacttacccccctatactcaaccatgaaataaacaagga 90  Q
    ||||||||||||||||||||||||||||||| ||||||||| ||| |||||||| || || | ||| ||||||||||||||||| |||||    
T  29455178 cgtcctaccccccattttattctccaaaaacgtagagaaatgacagttttagacata-cctcatatgctcaaccatgaaataaataagga 29455090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 2 - 90
Target Start/End: Original strand, 25000200 - 25000287
Alignment:
Q  2 gtcctaccccccattttattctccaaaaacatagagaaataacaattttagacttacccccctatactcaaccatgaaataaacaagga 90  Q
    |||||||||||||||||||||||||||||| ||||||||| ||| |||||||  || || | ||| |||||||||||||||||||||||    
T  25000200 gtcctaccccccattttattctccaaaaacgtagagaaatgacagttttagatcta-cctcatatgctcaaccatgaaataaacaagga 25000287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 9 - 88
Target Start/End: Original strand, 15709087 - 15709165
Alignment:
Q  9 cccccattttattctccaaaaacatagagaaataacaattttagacttacccccctatactcaaccatgaaataaacaag 88  Q
    |||||||||||||||||||||||  |||||||| ||| |||||||| || |||||||| |||||||||||||||||||||    
T  15709087 cccccattttattctccaaaaacgcagagaaatgacagttttagaccta-ccccctatgctcaaccatgaaataaacaag 15709165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 9 - 90
Target Start/End: Complemental strand, 24325639 - 24325559
Alignment:
Q  9 cccccattttattctccaaaaacatagagaaataacaattttagacttacccccctatactcaaccatgaaataaacaagga 90  Q
    |||||||||||||||||| ||  | |||||||| ||| ||||||||||| |||| ||| |||||||||||||||||||||||    
T  24325639 cccccattttattctccagaagtacagagaaatgacagttttagacttatcccc-tatgctcaaccatgaaataaacaagga 24325559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 43 - 90
Target Start/End: Complemental strand, 41834444 - 41834398
Alignment:
Q  43 acaattttagacttacccccctatactcaaccatgaaataaacaagga 90  Q
    |||||||||||| || |||| |||||||||||||||||||||||||||    
T  41834444 acaattttagacctagcccc-tatactcaaccatgaaataaacaagga 41834398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 22 - 87
Target Start/End: Original strand, 32305947 - 32306011
Alignment:
Q  22 ctccaaaaacatagagaaataacaattttagacttacccccctatactcaaccatgaaataaacaa 87  Q
    ||||| ||||| |||||||| ||| ||||||||||| ||| ||||  |||||||||||||||||||    
T  32305947 ctccagaaacacagagaaatgacagttttagactta-cccgctatgttcaaccatgaaataaacaa 32306011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 24325321 - 24325361
Alignment:
Q  1 cgtcctaccccccattttattctccaaaaacatagagaaat 41  Q
    |||||||||||||||||||||||||| ||||  ||||||||    
T  24325321 cgtcctaccccccattttattctccacaaacgcagagaaat 24325361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 24361946 - 24361986
Alignment:
Q  1 cgtcctaccccccattttattctccaaaaacatagagaaat 41  Q
    |||||||||||||||||||||||||| ||||  ||||||||    
T  24361946 cgtcctaccccccattttattctccacaaacgcagagaaat 24361986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 62; Significance: 5e-27; HSPs: 24)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 62; E-Value: 5e-27
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 25853663 - 25853575
Alignment:
Q  1 cgtcctaccccccattttattctccaaaaacatagagaaataacaattttagacttacccccctatactcaaccatgaaataaacaagga 90  Q
    |||||||||||||||||||||||||||||||  |||||||||||| |||||||| || |||||||| |||||||||||||||||||||||    
T  25853663 cgtcctaccccccattttattctccaaaaacgcagagaaataacagttttagaccta-ccccctatgctcaaccatgaaataaacaagga 25853575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 5137089 - 5137177
Alignment:
Q  1 cgtcctaccccccattttattctccaaaaacatagagaaataacaattttagacttacccccctatactcaaccatgaaataaacaagga 90  Q
    |||||||||||||||||||||||||||||||  |||||||| ||| |||||||| || |||||||| |||||||||||||||||||||||    
T  5137089 cgtcctaccccccattttattctccaaaaacgcagagaaatgacagttttagaccta-ccccctatgctcaaccatgaaataaacaagga 5137177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 23644571 - 23644659
Alignment:
Q  1 cgtcctaccccccattttattctccaaaaacatagagaaataacaattttagacttacccccctatactcaaccatgaaataaacaagga 90  Q
    |||||||||||||||||||||||||||||||  |||||||||| | |||||||| || |||||||| |||||||||||||||||||||||    
T  23644571 cgtcctaccccccattttattctccaaaaacgcagagaaataatagttttagaccta-ccccctatgctcaaccatgaaataaacaagga 23644659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 24300992 - 24300904
Alignment:
Q  1 cgtcctaccccccattttattctccaaaaacatagagaaataacaattttagacttacccccctatactcaaccatgaaataaacaagga 90  Q
    |||||||||||||||||||||||||||||||  |||||||| ||| |||||||| || |||||||| |||||||||||||||||||||||    
T  24300992 cgtcctaccccccattttattctccaaaaacgcagagaaatgacagttttagaccta-ccccctatgctcaaccatgaaataaacaagga 24300904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 39556013 - 39555925
Alignment:
Q  1 cgtcctaccccccattttattctccaaaaacatagagaaataacaattttagacttacccccctatactcaaccatgaaataaacaagga 90  Q
    |||||||||||||||||||||||||||||||  |||||||| ||| |||||||| || |||||||| |||||||||||||||||||||||    
T  39556013 cgtcctaccccccattttattctccaaaaacgcagagaaatgacagttttagaccta-ccccctatgctcaaccatgaaataaacaagga 39555925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 41046809 - 41046897
Alignment:
Q  1 cgtcctaccccccattttattctccaaaaacatagagaaataacaattttagacttacccccctatactcaaccatgaaataaacaagga 90  Q
    |||||||||||||||||||||||||||||||  |||||||| ||| |||||||| || |||||||| |||||||||||||||||||||||    
T  41046809 cgtcctaccccccattttattctccaaaaacgcagagaaatgacagttttagaccta-ccccctatgctcaaccatgaaataaacaagga 41046897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 2 - 90
Target Start/End: Complemental strand, 26837791 - 26837704
Alignment:
Q  2 gtcctaccccccattttattctccaaaaacatagagaaataacaattttagacttacccccctatactcaaccatgaaataaacaagga 90  Q
    |||||||||||||||||||||||||||||   |||||||| ||| |||||||||||| ||||||| |||||||||||||||||||||||    
T  26837791 gtcctaccccccattttattctccaaaaatgcagagaaatgacagttttagacttac-cccctatgctcaaccatgaaataaacaagga 26837704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 37727038 - 37727123
Alignment:
Q  1 cgtcctaccccccattttattctccaaaaacatagagaaataacaattttagacttacccccctatactcaaccatgaaataaacaa 87  Q
    |||||||||||||||||||||||||||||||  |||||||| ||| |||||||| || |||||||| ||||||||||||||||||||    
T  37727038 cgtcctaccccccattttattctccaaaaacgcagagaaatgacagttttagaccta-ccccctatgctcaaccatgaaataaacaa 37727123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 26275003 - 26274915
Alignment:
Q  1 cgtcctaccccccattttattctccaaaaacatagagaaataacaattttagacttacccccctatactcaaccatgaaataaacaagga 90  Q
    ||||||||||||||||||||||||||||| |  |||||||| ||| |||||||| || |||||||| |||||||||||||||||||||||    
T  26275003 cgtcctaccccccattttattctccaaaaccgcagagaaatgacagttttagaccta-ccccctatgctcaaccatgaaataaacaagga 26274915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 3 - 90
Target Start/End: Complemental strand, 27394011 - 27393925
Alignment:
Q  3 tcctaccccccattttattctccaaaaacatagagaaataacaattttagacttacccccctatactcaaccatgaaataaacaagga 90  Q
    |||||||||| ||||||||||||||||||  |||||||||||| |||||||| || |||| ||| |||||||||||||||||||||||    
T  27394011 tcctacccccaattttattctccaaaaacgcagagaaataacagttttagaccta-ccccatatgctcaaccatgaaataaacaagga 27393925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 22425249 - 22425161
Alignment:
Q  1 cgtcctaccccccattttattctccaaaaacatagagaaataacaattttagacttacccccctatactcaaccatgaaataaacaagga 90  Q
    |||||||||||||||||||||||||||||||  |||||||| | | |||||||  || |||||||| |||||||||||||||||||||||    
T  22425249 cgtcctaccccccattttattctccaaaaacgcagagaaattagatttttagatcta-ccccctatgctcaaccatgaaataaacaagga 22425161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 2 - 90
Target Start/End: Complemental strand, 17464926 - 17464839
Alignment:
Q  2 gtcctaccccccattttattctccaaaaacatagagaaataacaattttagacttacccccctatactcaaccatgaaataaacaagga 90  Q
    |||||||||||||||||||||||||||||   |||||||| ||| |||||||| ||  ||||||| |||||||||||||||||||||||    
T  17464926 gtcctaccccccattttattctccaaaaatgcagagaaatgacagttttagaccta-acccctatgctcaaccatgaaataaacaagga 17464839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 31779088 - 31779000
Alignment:
Q  1 cgtcctaccccccattttattctccaaaaacatagagaaataacaattttagacttacccccctatactcaaccatgaaataaacaagga 90  Q
    ||||| |||||||||||||||||||||||||  ||||||||  || |||||||| || |||||||| ||||||||||||||||| |||||    
T  31779088 cgtcccaccccccattttattctccaaaaacgcagagaaatgtcagttttagacgta-ccccctatgctcaaccatgaaataaataagga 31779000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 20840669 - 20840754
Alignment:
Q  1 cgtcctaccccccattttattctccaaaaacatagagaaataacaattttagacttacccccctatactcaaccatgaaataaacaa 87  Q
    |||||||||||||||||||||||||  ||||  |||||||| ||| |||||||| || ||||||||  |||||||||||||||||||    
T  20840669 cgtcctaccccccattttattctccttaaacgcagagaaatgacagttttagaccta-ccccctatgttcaaccatgaaataaacaa 20840754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 43973550 - 43973637
Alignment:
Q  1 cgtcctaccccccattttattctccaaaaacatagagaaataacaattttagacttacccccctatactcaaccatgaaataaacaagga 90  Q
    |||||||||||||||||||||||||||||||  ||| |||||||| |||||||| ||  |||||||  || ||||||||||||| |||||    
T  43973550 cgtcctaccccccattttattctccaaaaacgcagataaataacagttttagaccta--cccctatgttctaccatgaaataaataagga 43973637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 9 - 90
Target Start/End: Original strand, 30104598 - 30104678
Alignment:
Q  9 cccccattttattctccaaaaacatagagaaataacaattttagacttacccccctatactcaaccatgaaataaacaagga 90  Q
    ||||||||||||| || ||||||  |||||||| ||| |||||||| ||||||| ||| |||||||||||||||||||||||    
T  30104598 cccccattttattatctaaaaacgcagagaaatgacagttttagacctaccccc-tatgctcaaccatgaaataaacaagga 30104678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 34 - 90
Target Start/End: Complemental strand, 33412411 - 33412355
Alignment:
Q  34 agagaaataacaattttagacttacccccctatactcaaccatgaaataaacaagga 90  Q
    |||||||| | | |||||||| ||||||||||| |||||||||||||||||||||||    
T  33412411 agagaaatgatagttttagacctacccccctatgctcaaccatgaaataaacaagga 33412355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 34 - 90
Target Start/End: Complemental strand, 37847224 - 37847169
Alignment:
Q  34 agagaaataacaattttagacttacccccctatactcaaccatgaaataaacaagga 90  Q
    |||||||| |||||||||||||||||| | ||| |||||||||||||||||||||||    
T  37847224 agagaaatgacaattttagacttacccac-tatgctcaaccatgaaataaacaagga 37847169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 22 - 90
Target Start/End: Original strand, 49407925 - 49407992
Alignment:
Q  22 ctccaaaaacatagagaaataacaattttagacttacccccctatactcaaccatgaaataaacaagga 90  Q
    ||||||||||  |||||||| |||||||||||| || |||||||| || ||||||||||||||||||||    
T  49407925 ctccaaaaacgcagagaaatgacaattttagaccta-ccccctatgctaaaccatgaaataaacaagga 49407992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 8 - 90
Target Start/End: Original strand, 29801532 - 29801613
Alignment:
Q  8 ccccccattttattctccaaaaacatagagaaataacaattttagacttacccccctatactcaaccatgaaataaacaagga 90  Q
    |||||||||||||||| ||||||   |||||||| ||| |||||||| || || | ||| |||||||||||||||||||||||    
T  29801532 ccccccattttattcttcaaaaatgcagagaaatgacagttttagacata-cctcatatgctcaaccatgaaataaacaagga 29801613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 9 - 90
Target Start/End: Complemental strand, 32535387 - 32535307
Alignment:
Q  9 cccccattttattctccaaaaacatagagaaataacaattttagacttacccccctatactcaaccatgaaataaacaagga 90  Q
    |||||||||||||||||||||||  |||||||| | | |||||||| ||  |||||||  |||||||| |||||||||||||    
T  32535387 cccccattttattctccaaaaacgcagagaaatgatagttttagaccta-acccctatgttcaaccataaaataaacaagga 32535307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 48453098 - 48453138
Alignment:
Q  1 cgtcctaccccccattttattctccaaaaacatagagaaat 41  Q
    |||||||||||||||||||||||||||||||  ||||||||    
T  48453098 cgtcctaccccccattttattctccaaaaacgcagagaaat 48453138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 34 - 90
Target Start/End: Original strand, 55192259 - 55192314
Alignment:
Q  34 agagaaataacaattttagacttacccccctatactcaaccatgaaataaacaagga 90  Q
    |||||||| ||| |||||||| ||||||| ||| |||||||||||||||||||||||    
T  55192259 agagaaatgacagttttagacctaccccc-tatgctcaaccatgaaataaacaagga 55192314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 90
Target Start/End: Original strand, 27199848 - 27199899
Alignment:
Q  38 aaataacaattttagacttacccccctatactcaaccatgaaataaacaagga 90  Q
    ||||| || |||||||| ||||||| ||| |||||||||||||||||||||||    
T  27199848 aaatatcagttttagacctaccccc-tatgctcaaccatgaaataaacaagga 27199899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 61; Significance: 2e-26; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 2 - 90
Target Start/End: Complemental strand, 29100286 - 29100199
Alignment:
Q  2 gtcctaccccccattttattctccaaaaacatagagaaataacaattttagacttacccccctatactcaaccatgaaataaacaagga 90  Q
    ||||||||||||||||||||||||||||||  |||||||||||| |||||||| || |||||||| |||||||||||||||||||||||    
T  29100286 gtcctaccccccattttattctccaaaaacgcagagaaataacagttttagaccta-ccccctatgctcaaccatgaaataaacaagga 29100199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 3 - 90
Target Start/End: Original strand, 19590636 - 19590722
Alignment:
Q  3 tcctaccccccattttattctccaaaaacatagagaaataacaattttagacttacccccctatactcaaccatgaaataaacaagga 90  Q
    |||||||||||||||||||||||||||||  |||||||| ||| |||||||| || |||||||| |||||||||||||||||||||||    
T  19590636 tcctaccccccattttattctccaaaaacccagagaaatgacagttttagaccta-ccccctatgctcaaccatgaaataaacaagga 19590722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 3 - 90
Target Start/End: Complemental strand, 2659274 - 2659188
Alignment:
Q  3 tcctaccccccattttattctccaaaaacatagagaaataacaattttagacttacccccctatactcaaccatgaaataaacaagga 90  Q
    |||||||||||||||||||||||||||||  |||||||| ||| |||||||| || ||||||||  ||||||||||||||||||||||    
T  2659274 tcctaccccccattttattctccaaaaacgcagagaaatgacagttttagaccta-ccccctatgttcaaccatgaaataaacaagga 2659188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 19830529 - 19830615
Alignment:
Q  1 cgtcctaccccccattttattctccaaaaacatagagaaataacaattttagacttacccccctatactcaaccatgaaataaacaag 88  Q
    |||||||||||||||||||||||||||||||  |||||||| ||| |||||||| || |||||||| |||| ||||||||||||||||    
T  19830529 cgtcctaccccccattttattctccaaaaacgcagagaaatgacagttttagaccta-ccccctatgctcagccatgaaataaacaag 19830615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 37786876 - 37786957
Alignment:
Q  1 cgtcctaccccccattttattctccaaaaacatagagaaataacaattttagacttacccccctatactcaaccatgaaataa 83  Q
    |||||||||||||||||||||||||||||||  |||||||| ||| |||||||| || |||||||| ||||||||||||||||    
T  37786876 cgtcctaccccccattttattctccaaaaacgcagagaaatgacagttttagaccta-ccccctatgctcaaccatgaaataa 37786957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 32005050 - 32004962
Alignment:
Q  1 cgtcctaccccccattttattctccaaaaacatagagaaataacaattttagacttacccccctatactcaaccatgaaataaacaagga 90  Q
    |||||||| ||||||||||||||||||||||  |||||||| ||| |||||||| || ||||||||  ||||||||||||||||||||||    
T  32005050 cgtcctactccccattttattctccaaaaacgcagagaaatgacagttttagaccta-ccccctatgttcaaccatgaaataaacaagga 32004962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 34534227 - 34534139
Alignment:
Q  1 cgtcctaccccccattttattctccaaaaacatagagaaataacaattttagacttacccccctatactcaaccatgaaataaacaagga 90  Q
    |||||||||||||||||||||||||||||| | |||||||| ||| |||||||| || || |||||  ||||||||||||||||||||||    
T  34534227 cgtcctaccccccattttattctccaaaaaaacagagaaatgacagttttagaccta-ccacctatgttcaaccatgaaataaacaagga 34534139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 13 - 90
Target Start/End: Complemental strand, 4478124 - 4478049
Alignment:
Q  13 cattttattctccaaaaacatagagaaataacaattttagacttacccccctatactcaaccatgaaataaacaagga 90  Q
    |||||||||||||||||||  |||||||||||| |||||||| ||  ||||||| |||||||||||||||||||||||    
T  4478124 cattttattctccaaaaacgcagagaaataacagttttagaccta--cccctatgctcaaccatgaaataaacaagga 4478049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 23953165 - 23953082
Alignment:
Q  1 cgtcctaccccccattttattctccaaaaacatagagaaataacaattttagacttacccccctatactcaaccatgaaataaaca 86  Q
    |||| ||||||||||||||||||||||||||  |||||||||||| |||||||| ||  ||||||| |||| ||||||||||||||    
T  23953165 cgtcataccccccattttattctccaaaaacgcagagaaataacagttttagacata--cccctatgctcagccatgaaataaaca 23953082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 4641549 - 4641637
Alignment:
Q  1 cgtcctaccccccattttattctccaaaaacatagagaaataacaattttagacttacccccctatactcaaccatgaaataaacaagga 90  Q
    ||||||||||||||||||||||||||||||   |||||||| | | |||||||| |  |||||||| |||||||||||||||||||||||    
T  4641549 cgtcctaccccccattttattctccaaaaatgcagagaaatgatagttttagacct-gccccctatgctcaaccatgaaataaacaagga 4641637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 35289337 - 35289249
Alignment:
Q  1 cgtcctaccccccattttattctccaaaaacatagagaaataacaattttagacttacccccctatactcaaccatgaaataaacaagga 90  Q
    |||| ||||||||||||||||||| ||||||  |||||||||| | |||||||| || ||||||||  ||||||||||||||||||||||    
T  35289337 cgtcataccccccattttattctctaaaaacgcagagaaataatagttttagaccta-ccccctatgttcaaccatgaaataaacaagga 35289249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 2 - 87
Target Start/End: Original strand, 38858753 - 38858837
Alignment:
Q  2 gtcctaccccccattttattctccaaaaacatagagaaataacaattttagacttacccccctatactcaaccatgaaataaacaa 87  Q
    ||||||||||||||||||||||||||||||  |||||||| ||| |||||||| || ||| |||| ||||||||||||||| ||||    
T  38858753 gtcctaccccccattttattctccaaaaacgcagagaaatgacagttttagaccta-cccactatgctcaaccatgaaatagacaa 38858837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 37 - 90
Target Start/End: Complemental strand, 35579287 - 35579235
Alignment:
Q  37 gaaataacaattttagacttacccccctatactcaaccatgaaataaacaagga 90  Q
    ||||||||| |||||||| ||||||| ||| ||||||||| |||||||||||||    
T  35579287 gaaataacagttttagacctaccccc-tatgctcaaccataaaataaacaagga 35579235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 59; Significance: 3e-25; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 2 - 88
Target Start/End: Original strand, 14432252 - 14432337
Alignment:
Q  2 gtcctaccccccattttattctccaaaaacatagagaaataacaattttagacttacccccctatactcaaccatgaaataaacaag 88  Q
    ||||||||||||||||||||||||||||||  |||||||| ||| |||||||| || ||||||||||||||||||||||||||||||    
T  14432252 gtcctaccccccattttattctccaaaaacgcagagaaatgacagttttagaccta-ccccctatactcaaccatgaaataaacaag 14432337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 239461 - 239549
Alignment:
Q  1 cgtcctaccccccattttattctccaaaaacatagagaaataacaattttagacttacccccctatactcaaccatgaaataaacaagga 90  Q
    |||||||||||||||||||||||||||||||  |||||||| ||| |||||||| ||  ||||||| |||||||||||||||||||||||    
T  239461 cgtcctaccccccattttattctccaaaaacgcagagaaatgacagttttagaccta-tcccctatgctcaaccatgaaataaacaagga 239549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 11090630 - 11090718
Alignment:
Q  1 cgtcctaccccccattttattctccaaaaacatagagaaataacaattttagacttacccccctatactcaaccatgaaataaacaagga 90  Q
    |||||||||||||||||||||||||||||||  |||||||| ||| |||||||| || ||||||||  ||||||||||||||||||||||    
T  11090630 cgtcctaccccccattttattctccaaaaacgcagagaaatgacagttttagaccta-ccccctatgttcaaccatgaaataaacaagga 11090718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 40815781 - 40815693
Alignment:
Q  1 cgtcctaccccccattttattctccaaaaacatagagaaataacaattttagacttacccccctatactcaaccatgaaataaacaagga 90  Q
    |||||||||||||||||||||||||||||||  |||||||| ||| |||||||| || ||| |||| |||||||||||||||||||||||    
T  40815781 cgtcctaccccccattttattctccaaaaacgcagagaaatgacagttttagaccta-ccctctatgctcaaccatgaaataaacaagga 40815693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 5 - 90
Target Start/End: Original strand, 43058446 - 43058530
Alignment:
Q  5 ctaccccccattttattctccaaaaacatagagaaataacaattttagacttacccccctatactcaaccatgaaataaacaagga 90  Q
    ||||||||||||||||||||||||||| ||||||||| ||| |||||||| || |||||||| ||||| |||||||||||||||||    
T  43058446 ctaccccccattttattctccaaaaacgtagagaaatgacagttttagaccta-ccccctatgctcaatcatgaaataaacaagga 43058530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 2 - 90
Target Start/End: Original strand, 40027250 - 40027337
Alignment:
Q  2 gtcctaccccccattttattctccaaaaacatagagaaataacaattttagacttacccccctatactcaaccatgaaataaacaagga 90  Q
    ||||||||| ||||||||||||||||||||  |||||||| ||| |||||||| || |||||||| |||||||||||||||||||||||    
T  40027250 gtcctaccctccattttattctccaaaaacgcagagaaatgacagttttagaccta-ccccctatgctcaaccatgaaataaacaagga 40027337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 26538206 - 26538294
Alignment:
Q  1 cgtcctaccccccattttattctccaaaaacatagagaaataacaattttagacttacccccctatactcaaccatgaaataaacaagga 90  Q
    |||||||||||||||||||||||||||||||| |||||||||||| |||||||| ||  || |||| ||||| ||||||||||| |||||    
T  26538206 cgtcctaccccccattttattctccaaaaacacagagaaataacagttttagaccta-tcctctatgctcaatcatgaaataaataagga 26538294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 3 - 90
Target Start/End: Complemental strand, 18451265 - 18451179
Alignment:
Q  3 tcctaccccccattttattctccaaaaacatagagaaataacaattttagacttacccccctatactcaaccatgaaataaacaagga 90  Q
    |||||||||||||||||||||||||||||  |||||||| ||| |||||||| || |||||||| || |||||||||||||| |||||    
T  18451265 tcctaccccccattttattctccaaaaacgcagagaaatgacagttttagaccta-ccccctatgcttaaccatgaaataaataagga 18451179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 9 - 90
Target Start/End: Original strand, 1978225 - 1978305
Alignment:
Q  9 cccccattttattctccaaaaacatagagaaataacaattttagacttacccccctatactcaaccatgaaataaacaagga 90  Q
    |||||||||||||||||||||||  |||||||| ||| |||||||| || |||| ||| |||||||||||||||||||||||    
T  1978225 cccccattttattctccaaaaacgcagagaaatgacagttttagaccta-ccccatatgctcaaccatgaaataaacaagga 1978305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 28616722 - 28616808
Alignment:
Q  1 cgtcctaccccccattttattctcc-aaaaacatagagaaataacaattttagacttacccccctatactcaaccatgaaataaacaa 87  Q
    ||||||||||||||||||||| ||| ||||||  ||||||||| || |||||||| || ||||||||  |||||||||||||||||||    
T  28616722 cgtcctaccccccattttattatccaaaaaacgcagagaaatagcagttttagaccta-ccccctatgttcaaccatgaaataaacaa 28616808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 8425796 - 8425709
Alignment:
Q  1 cgtcctaccccccattttattctccaaaaacatagagaaataacaattttagacttacccccctatactcaaccatgaaataaacaagga 90  Q
    |||| ||||||| ||||||||||||||||||  |||||||| ||| |||||||| ||  |||||||  | ||||||||||||||||||||    
T  8425796 cgtcttacccccaattttattctccaaaaacgcagagaaatgacagttttagaccta--cccctatgattaaccatgaaataaacaagga 8425709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 9 - 90
Target Start/End: Original strand, 3025582 - 3025662
Alignment:
Q  9 cccccattttattctccaaaaacatagagaaataacaattttagacttacccccctatactcaaccatgaaataaacaagga 90  Q
    |||||||||||||||| ||||||  | |||||| ||| |||||||| || |||||||| ||||||||||||||||| |||||    
T  3025582 cccccattttattctcaaaaaacgcaaagaaatgacagttttagaccta-ccccctatgctcaaccatgaaataaataagga 3025662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 22374429 - 22374517
Alignment:
Q  1 cgtcctaccccccattttattctccaaaaacatagagaaataacaattttagacttacccccctatactcaaccatgaaataaacaagga 90  Q
    |||||||||||||||||||||||||||||||  | |||||| | | |||||||| ||  || |||| |||||| ||||||||||||||||    
T  22374429 cgtcctaccccccattttattctccaaaaacgcaaagaaatgatagttttagaccta-acctctatgctcaactatgaaataaacaagga 22374517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 9 - 90
Target Start/End: Original strand, 7446458 - 7446542
Alignment:
Q  9 cccccattttattctccaaaaacatagagaaataac----aattttagacttacccccctatactcaaccatgaaataaacaagga 90  Q
    |||||||||||||||||||||||  |||||||| ||    |||||||||| || ||||||||  ||||||||||||||||||||||    
T  7446458 cccccattttattctccaaaaacgcagagaaatgacagttaattttagacata-ccccctatgttcaaccatgaaataaacaagga 7446542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 34 - 87
Target Start/End: Complemental strand, 28143434 - 28143382
Alignment:
Q  34 agagaaataacaattttagacttacccccctatactcaaccatgaaataaacaa 87  Q
    |||||||| ||| |||||||| ||||||| ||| ||||||||||||||||||||    
T  28143434 agagaaatgacagttttagacctaccccc-tatgctcaaccatgaaataaacaa 28143382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0273 (Bit Score: 58; Significance: 1e-24; HSPs: 1)
Name: scaffold0273
Description:

Target: scaffold0273; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 4643 - 4555
Alignment:
Q  1 cgtcctaccccccattttattctccaaaaacatagagaaataacaattttagacttacccccctatactcaaccatgaaataaacaagga 90  Q
    |||||||||||||||||||||||||||||||| |||||||| ||| |||||||| || |||||||| |||| ||||||||||||||||||    
T  4643 cgtcctaccccccattttattctccaaaaacacagagaaatgacagttttagaccta-ccccctatgctcatccatgaaataaacaagga 4555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 58; Significance: 1e-24; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 13224749 - 13224837
Alignment:
Q  1 cgtcctaccccccattttattctccaaaaacatagagaaataacaattttagacttacccccctatactcaaccatgaaataaacaagga 90  Q
    |||||||||||||||||||||||||||||||  |||||||| ||| |||||||| || |||||||| |||||||||||||||||||||||    
T  13224749 cgtcctaccccccattttattctccaaaaacgcagagaaatgacagttttagaccta-ccccctatgctcaaccatgaaataaacaagga 13224837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 31133329 - 31133417
Alignment:
Q  1 cgtcctaccccccattttattctccaaaaacatagagaaataacaattttagacttacccccctatactcaaccatgaaataaacaagga 90  Q
    ||||||||||||||||||||||||||||||| ||||||||| ||| |||||||| || || | ||| |||||||||||||||||||||||    
T  31133329 cgtcctaccccccattttattctccaaaaacgtagagaaatgacagttttagaccta-cctcttatgctcaaccatgaaataaacaagga 31133417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 2 - 87
Target Start/End: Complemental strand, 44831680 - 44831596
Alignment:
Q  2 gtcctaccccccattttattctccaaaaacatagagaaataacaattttagacttacccccctatactcaaccatgaaataaacaa 87  Q
    ||||||||||||||||||||||||||||||| |||||||| ||| |||||||| || |||||||| ||||||||||||||| ||||    
T  44831680 gtcctaccccccattttattctccaaaaacacagagaaatgacagttttagaccta-ccccctatgctcaaccatgaaatagacaa 44831596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 3 - 90
Target Start/End: Complemental strand, 4630226 - 4630140
Alignment:
Q  3 tcctaccccccattttattctccaaaaacatagagaaataacaattttagacttacccccctatactcaaccatgaaataaacaagga 90  Q
    |||||||||||||||||||||||||||||  ||| |||| ||| |||||||| || |||||||| |||||||||||||||||||||||    
T  4630226 tcctaccccccattttattctccaaaaacgcagaaaaatgacagttttagaccta-ccccctatgctcaaccatgaaataaacaagga 4630140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 9930093 - 9930005
Alignment:
Q  1 cgtcctaccccccattttattctccaaaaacatagagaaataacaattttagacttacccccctatactcaaccatgaaataaacaagga 90  Q
    ||||||||||||||||||||||||||||| |  |||||||| | | |||||||| || |||||||| |||||||||||||||||||||||    
T  9930093 cgtcctaccccccattttattctccaaaagcgcagagaaatgatagttttagaccta-ccccctatgctcaaccatgaaataaacaagga 9930005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 33743355 - 33743267
Alignment:
Q  1 cgtcctaccccccattttattctccaaaaacatagagaaataacaattttagacttacccccctatactcaaccatgaaataaacaagga 90  Q
    |||||||||||||||||||||||||||||||  |||||||||||| |||||||| || | ||||||  |||||||||||||||| |||||    
T  33743355 cgtcctaccccccattttattctccaaaaacgcagagaaataacagttttagaccta-ctccctatgttcaaccatgaaataaataagga 33743267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 7 - 90
Target Start/End: Original strand, 12571979 - 12572061
Alignment:
Q  7 accccccattttattctccaaaaacatagagaaataacaattttagacttacccccctatactcaaccatgaaataaacaagga 90  Q
    |||||||||||||||||||||||||  |||||||| ||| |||||||| || |||||||| ||||||||||||||||| |||||    
T  12571979 accccccattttattctccaaaaacgcagagaaatgacagttttagaccta-ccccctatgctcaaccatgaaataaaaaagga 12572061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 9 - 88
Target Start/End: Original strand, 41681250 - 41681328
Alignment:
Q  9 cccccattttattctccaaaaacatagagaaataacaattttagacttacccccctatactcaaccatgaaataaacaag 88  Q
    |||||||||||||||||||||||  |||||||| ||| ||||| || || ||||||||||||||||||||||||||||||    
T  41681250 cccccattttattctccaaaaacgcagagaaatgacagttttaaacata-ccccctatactcaaccatgaaataaacaag 41681328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 19176726 - 19176641
Alignment:
Q  1 cgtcctaccccccattttattctccaaaaacatagagaaataacaattttagacttacccccctatactcaaccatgaaataaacaa 87  Q
    |||||||||||||||||||||||||||||||  ||| |||| ||| |||||||| || || ||||| ||||||||||||||||||||    
T  19176726 cgtcctaccccccattttattctccaaaaacgcagacaaatgacagttttagaccta-ccacctatgctcaaccatgaaataaacaa 19176641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 9 - 90
Target Start/End: Complemental strand, 9178064 - 9177984
Alignment:
Q  9 cccccattttattctccaaaaacatagagaaataacaattttagacttacccccctatactcaaccatgaaataaacaagga 90  Q
    |||||||||||||||| ||||||  |||||||| |||||||||||| || || ||||| |||||||||||||||||||||||    
T  9178064 cccccattttattctcaaaaaacgcagagaaatgacaattttagaccta-cctcctatgctcaaccatgaaataaacaagga 9177984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 33328267 - 33328355
Alignment:
Q  1 cgtcctaccccccattttattctccaaaaacatagagaaataacaattttagacttacccccctatactcaaccatgaaataaacaagga 90  Q
    |||||||||| | ||||||||||||||||||  | |||||| ||| |||||||| || |||||||| |||||||||||||||||||||||    
T  33328267 cgtcctaccctcgattttattctccaaaaacgcaaagaaatgacagttttagaccta-ccccctatgctcaaccatgaaataaacaagga 33328355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 22 - 90
Target Start/End: Original strand, 18805292 - 18805359
Alignment:
Q  22 ctccaaaaacatagagaaataacaattttagacttacccccctatactcaaccatgaaataaacaagga 90  Q
    ||||| ||||| |||||||| ||| ||||||||||| |||||||| | |||||||||||||||||||||    
T  18805292 ctccagaaacacagagaaatgacagttttagactta-ccccctatgcacaaccatgaaataaacaagga 18805359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 11656564 - 11656650
Alignment:
Q  1 cgtcctaccccccattttattctcc-aaaaacatagagaaataacaattttagacttacccccctatactcaaccatgaaataaacaa 87  Q
    ||||||||||||||||||||||||| ||||||  ||||||||  || |||||||| || |||| |||  |||||||||||||||||||    
T  11656564 cgtcctaccccccattttattctccaaaaaacgcagagaaatggcagttttagaccta-ccccttatgttcaaccatgaaataaacaa 11656650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 62 - 90
Target Start/End: Complemental strand, 42036148 - 42036120
Alignment:
Q  62 cctatactcaaccatgaaataaacaagga 90  Q
    |||||||||||||||||||||||||||||    
T  42036148 cctatactcaaccatgaaataaacaagga 42036120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 58; Significance: 1e-24; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 50970714 - 50970626
Alignment:
Q  1 cgtcctaccccccattttattctccaaaaacatagagaaataacaattttagacttacccccctatactcaaccatgaaataaacaagga 90  Q
    |||||||||||||||||||||||||||||||  |||||||| ||| |||||||| || |||||||| |||||||||||||||||||||||    
T  50970714 cgtcctaccccccattttattctccaaaaacgcagagaaatgacagttttagaccta-ccccctatgctcaaccatgaaataaacaagga 50970626  T

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Target: chr1; HSP #2
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 5540254 - 5540167
Alignment:
Q  1 cgtcctaccccccattttattctccaaaaacatagagaaataacaattttagacttacccccctatactcaaccatgaaataaacaagga 90  Q
    |||||||||||||||||||||||||||||||  |||||||| ||| |||||||| ||  ||||||| |||||||||||||||||||||||    
T  5540254 cgtcctaccccccattttattctccaaaaacgcagagaaatgacagttttagaccta--cccctatgctcaaccatgaaataaacaagga 5540167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 5963014 - 5962929
Alignment:
Q  1 cgtcctaccccccattttattctccaaaaacatagagaaataacaattttagacttacccccctatactcaaccatgaaataaacaa 87  Q
    |||||||||||||||||||||||||||||||  |||||||| ||| |||||||| || |||||||| ||||||||||||||||||||    
T  5963014 cgtcctaccccccattttattctccaaaaacgcagagaaatgacagttttagaccta-ccccctatgctcaaccatgaaataaacaa 5962929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 29307062 - 29307149
Alignment:
Q  1 cgtcctaccccccattttattctccaaaaacatagagaaataacaattttagacttacccccctatactcaaccatgaaataaacaagga 90  Q
    |||||||||||||||||||||||||||||||  |||||||| ||| |||||||| ||  ||||||| |||||||||||||||||||||||    
T  29307062 cgtcctaccccccattttattctccaaaaacgcagagaaatgacagttttagaccta--cccctatgctcaaccatgaaataaacaagga 29307149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 15173205 - 15173293
Alignment:
Q  1 cgtcctaccccccattttattctccaaaaacatagagaaataacaattttagacttacccccctatactcaaccatgaaataaacaagga 90  Q
    |||||||||||||||||||||||||||||||  |||||||| ||| |||||||| || |||||||| |||||||| ||||||||||||||    
T  15173205 cgtcctaccccccattttattctccaaaaacgcagagaaatgacagttttagaccta-ccccctatgctcaaccaagaaataaacaagga 15173293  T

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Target: chr1; HSP #6
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 21856479 - 21856391
Alignment:
Q  1 cgtcctaccccccattttattctccaaaaacatagagaaataacaattttagacttacccccctatactcaaccatgaaataaacaagga 90  Q
    |||||||| ||||||||||||||||||||||  |||||||| ||| |||||||| || |||||||| |||||||||||||||||||||||    
T  21856479 cgtcctactccccattttattctccaaaaacgcagagaaatgacagttttagaccta-ccccctatgctcaaccatgaaataaacaagga 21856391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 29869729 - 29869817
Alignment:
Q  1 cgtcctaccccccattttattctccaaaaacatagagaaataacaattttagacttacccccctatactcaaccatgaaataaacaagga 90  Q
    |||||||| ||||||||||||||||||||||  |||||||| ||| |||||||| || |||||||| |||||||||||||||||||||||    
T  29869729 cgtcctacaccccattttattctccaaaaacgcagagaaatgacagttttagaccta-ccccctatgctcaaccatgaaataaacaagga 29869817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 3 - 90
Target Start/End: Original strand, 17433327 - 17433413
Alignment:
Q  3 tcctaccccccattttattctccaaaaacatagagaaataacaattttagacttacccccctatactcaaccatgaaataaacaagga 90  Q
    |||||||||||||||||||||||||||||  |||||||| ||| |||||||| ||  ||||||| |||||||||||||||||||||||    
T  17433327 tcctaccccccattttattctccaaaaacgcagagaaatgacagttttagaccta-tcccctatgctcaaccatgaaataaacaagga 17433413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 9019082 - 9019170
Alignment:
Q  1 cgtcctaccccccattttattctccaaaaacatagagaaataacaattttagacttacccccctatactcaaccatgaaataaacaagga 90  Q
    |||||||||||||||||||||||||||||||  |||||||| | | |||||||  || |||||||| |||||||||||||||||||||||    
T  9019082 cgtcctaccccccattttattctccaaaaacgcagagaaattatatttttagatcta-ccccctatgctcaaccatgaaataaacaagga 9019170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 18984228 - 18984316
Alignment:
Q  1 cgtcctaccccccattttattctccaaaaacatagagaaataacaattttagacttacccccctatactcaaccatgaaataaacaagga 90  Q
    |||||||||||||||||||||||||||||||  |||||||| | | |||||||| ||  ||||||| |||||||||||||||||||||||    
T  18984228 cgtcctaccccccattttattctccaaaaacgcagagaaatgatagttttagaccta-acccctatgctcaaccatgaaataaacaagga 18984316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 33144355 - 33144267
Alignment:
Q  1 cgtcctaccccccattttattctccaaaaacatagagaaataacaattttagacttacccccctatactcaaccatgaaataaacaagga 90  Q
    |||||||||||||||||||||||||||||||  |||||||| ||| |||||||| || ||| |||| || ||||||||||||||||||||    
T  33144355 cgtcctaccccccattttattctccaaaaacgcagagaaatgacagttttagaccta-ccctctatgcttaaccatgaaataaacaagga 33144267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 5 - 90
Target Start/End: Original strand, 4636085 - 4636169
Alignment:
Q  5 ctaccccccattttattctccaaaaacatagagaaataacaattttagacttacccccctatactcaaccatgaaataaacaagga 90  Q
    ||||||||||||||||||| |||||||  |||||||| ||| |||||||| || ||||||||  ||||||||||||||||||||||    
T  4636085 ctaccccccattttattcttcaaaaacgcagagaaatgacagttttagaccta-ccccctatgttcaaccatgaaataaacaagga 4636169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 26859495 - 26859408
Alignment:
Q  1 cgtcctaccccccattttattctccaaaaacatagagaaataacaattttagacttacccccctatactcaaccatgaaataaacaagga 90  Q
    ||||||||||||||||| |||||||||||||  |||||||||| | |||||||| || || |||||  ||||||||||||||||||||||    
T  26859495 cgtcctaccccccattt-attctccaaaaacgcagagaaataatagttttagaccta-cctcctatgttcaaccatgaaataaacaagga 26859408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 39154128 - 39154216
Alignment:
Q  1 cgtcctaccccccattttattctccaaaaacatagagaaataacaattttagacttacccccctatactcaaccatgaaataaacaagga 90  Q
    |||||||||||||||| ||||||||||||||  | |||||| ||| ||||||||  |  ||||||| |||||||||||||||||||||||    
T  39154128 cgtcctaccccccattctattctccaaaaacgcatagaaatgacagttttagaccca-tcccctatgctcaaccatgaaataaacaagga 39154216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 34 - 90
Target Start/End: Complemental strand, 17088544 - 17088488
Alignment:
Q  34 agagaaataacaattttagacttacccccctatactcaaccatgaaataaacaagga 90  Q
    |||||||| ||| |||||||| ||||||||||| |||||||||||||||||||||||    
T  17088544 agagaaatgacagttttagacctacccccctatgctcaaccatgaaataaacaagga 17088488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 12 - 90
Target Start/End: Complemental strand, 8678967 - 8678890
Alignment:
Q  12 ccattttattctccaaaaacatagagaaataacaattttagacttacccccctatactcaaccatgaaataaacaagga 90  Q
    |||||||||||||||||||   |||||||| ||| |||||||| || |||||||| ||||||||| |||||||||||||    
T  8678967 ccattttattctccaaaaatgcagagaaatgacagttttagaccta-ccccctatgctcaaccataaaataaacaagga 8678890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 15646631 - 15646543
Alignment:
Q  1 cgtcctaccccccattttattctccaaaaacatagagaaataacaattttagacttacccc--cctatactcaaccatgaaataaacaa 87  Q
    |||||||||||| ||||||||||||||||||  |||||||| ||| |||||||| ||||||    |||  |||||||||||||||||||    
T  15646631 cgtcctacccccaattttattctccaaaaacgcagagaaatgacagttttagacctaccccattttatgttcaaccatgaaataaacaa 15646543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 36 - 87
Target Start/End: Original strand, 45048298 - 45048348
Alignment:
Q  36 agaaataacaattttagacttacccccctatactcaaccatgaaataaacaa 87  Q
    |||||||||| ||||||||||| ||| |||| ||||||||||||||||||||    
T  45048298 agaaataacagttttagactta-ccctctatgctcaaccatgaaataaacaa 45048348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1223 (Bit Score: 54; Significance: 3e-22; HSPs: 1)
Name: scaffold1223
Description:

Target: scaffold1223; HSP #1
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 861 - 949
Alignment:
Q  1 cgtcctaccccccattttattctccaaaaacatagagaaataacaattttagacttacccccctatactcaaccatgaaataaacaagga 90  Q
    |||||||||||||||||||||||||||||||  |||||||||||| |||||||| || |||| ||| |||||||| ||||||||||||||    
T  861 cgtcctaccccccattttattctccaaaaacgcagagaaataacagttttagacata-ccccttatgctcaaccacgaaataaacaagga 949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 54; Significance: 3e-22; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 134109 - 134021
Alignment:
Q  1 cgtcctaccccccattttattctccaaaaacatagagaaataacaattttagacttacccccctatactcaaccatgaaataaacaagga 90  Q
    |||||||||||||||||||||||||||||||  |||||||| ||| |||||||| || |||||||| ||||||||||||||||| |||||    
T  134109 cgtcctaccccccattttattctccaaaaacgcagagaaatgacagttttagaccta-ccccctatgctcaaccatgaaataaataagga 134021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0157 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: scaffold0157
Description:

Target: scaffold0157; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 16605 - 16690
Alignment:
Q  1 cgtcctaccccccattttattctccaaaaacatagagaaataacaattttagacttacccccctatactcaaccatgaaataaacaa 87  Q
    |||| ||||||||||||||||||||||||||  |||||||| ||| |||||||| || |||||||| ||||||||||||||||||||    
T  16605 cgtcataccccccattttattctccaaaaacgcagagaaatgacagttttagaccta-ccccctatgctcaaccatgaaataaacaa 16690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0417 (Bit Score: 50; Significance: 8e-20; HSPs: 1)
Name: scaffold0417
Description:

Target: scaffold0417; HSP #1
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 10730 - 10818
Alignment:
Q  1 cgtcctaccccccattttattctccaaaaacatagagaaataacaattttagacttacccccctatactcaaccatgaaataaacaagga 90  Q
    |||||||||| |||||||||||||||||||   |||||||| ||| |||||||| || |||||||| |||||||||||||||||||||||    
T  10730 cgtcctaccctccattttattctccaaaaatgcagagaaatgacagttttagacgta-ccccctatgctcaaccatgaaataaacaagga 10818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0176 (Bit Score: 47; Significance: 5e-18; HSPs: 1)
Name: scaffold0176
Description:

Target: scaffold0176; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 9 - 90
Target Start/End: Original strand, 18951 - 19030
Alignment:
Q  9 cccccattttattctccaaaaacatagagaaataacaattttagacttacccccctatactcaaccatgaaataaacaagga 90  Q
    |||||||||||||||||||||||  |||||||||||| |||||||||||  || ||||  ||||||||||||||||||||||    
T  18951 cccccattttattctccaaaaacgcagagaaataacagttttagactta--cctctatgttcaaccatgaaataaacaagga 19030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0951 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0951
Description:

Target: scaffold0951; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 1776 - 1864
Alignment:
Q  1 cgtcctaccccccattttattctccaaaaacatagagaaataacaattttagacttacccccctatactcaaccatgaaataaacaagga 90  Q
    |||||||||||||||||||||||||||||||  |||||||| ||| |||||||| || ||||||||  |||| ||||||||||| |||||    
T  1776 cgtcctaccccccattttattctccaaaaacgcagagaaatgacagttttagaccta-ccccctatgatcaaacatgaaataaaaaagga 1864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 9 - 90
Target Start/End: Complemental strand, 42587 - 42507
Alignment:
Q  9 cccccattttattctccaaaaacatagagaaataacaattttagacttacccccctatactcaaccatgaaataaacaagga 90  Q
    |||||||||||||||||||||||  |||||||| ||| |||||||| || |||||||| ||||| ||||||||||| |||||    
T  42587 cccccattttattctccaaaaacgcagagaaatgacagttttagaccta-ccccctatgctcaatcatgaaataaataagga 42507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0432 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0432
Description:

Target: scaffold0432; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 9 - 90
Target Start/End: Complemental strand, 10301 - 10221
Alignment:
Q  9 cccccattttattctccaaaaacatagagaaataacaattttagacttacccccctatactcaaccatgaaataaacaagga 90  Q
    ||||||||||||||||||||||   |||||||| ||| ||||| || || |||||||| |||||||||||||| ||||||||    
T  10301 cccccattttattctccaaaaattcagagaaatgacagttttaaaccta-ccccctatgctcaaccatgaaatcaacaagga 10221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 38; Significance: 0.000000000001; HSPs: 3)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 64411 - 64472
Alignment:
Q  1 cgtcctaccccccattttattctccaaaaacatagagaaataacaattttagacttaccccc 62  Q
    |||| ||||||||||||||||||||||||||  |||||||| ||| |||||||| |||||||    
T  64411 cgtcataccccccattttattctccaaaaacgcagagaaatgacagttttagacctaccccc 64472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 22 - 89
Target Start/End: Complemental strand, 205784 - 205718
Alignment:
Q  22 ctccaaaaacatagagaaataacaattttagacttacccccctatactcaaccatgaaataaacaagg 89  Q
    ||||||||||  ||||||||  || |||||||| ||||||| ||| ||||||||||||||||||||||    
T  205784 ctccaaaaacgcagagaaatggcagttttagacctaccccc-tatgctcaaccatgaaataaacaagg 205718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 87
Target Start/End: Original strand, 205105 - 205145
Alignment:
Q  47 ttttagacttacccccctatactcaaccatgaaataaacaa 87  Q
    |||||||| ||  ||||||||||||||||||||||||||||    
T  205105 ttttagacctatacccctatactcaaccatgaaataaacaa 205145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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