View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16523_high_4 (Length: 491)
Name: NF16523_high_4
Description: NF16523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16523_high_4 |
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Alignment Details
Target: chr5 (Bit Score: 419; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 419; E-Value: 0
Query Start/End: Original strand, 4 - 475
Target Start/End: Original strand, 41075148 - 41075623
Alignment:
| Q |
4 |
ggagtagcaaaggttattggtaccatgaaggcaaatttgattggtatccggttattgagtggttgttttttggagtatacatgagtgaggtacctattcc |
103 |
Q |
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| T |
41075148 |
ggagtaacaaaggttattggtaccataaaggcaaatttgattggtatccggttattgagtggttgttttttggagtatacatgagtgaggtacctattcc |
41075247 |
T |
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| Q |
104 |
tttgaattcacgatggaggtgatgctagtgtatcagagttctcctggttccttttggactatcttaagggtctggtctaagtggtg----gaatacttat |
199 |
Q |
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| T |
41075248 |
tttgaattcacgatggaggtgatgctagtgtatcagagttctcctgattccttttggactatcttaagtgtctggtctaagtggtgaaaggaatacttat |
41075347 |
T |
|
| Q |
200 |
gtgtgtattttgtttagatggggtgctagcctgtgtttctttatgatagttagtctcattcttagtttcagtatcagcttgagtcttgttaggagttagg |
299 |
Q |
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| T |
41075348 |
gtgtgtattttgtttagatggggtgttagcctgtgtttctttacgatagttagtctcattcttagtttcagtatcagcttgagtcttgttaggagttagg |
41075447 |
T |
|
| Q |
300 |
tccaatagttggtattctggatttctggtggtgtgtgcttagttttgacattgagatctgctgtaactgtattttgtgattatccggttgtctaacacat |
399 |
Q |
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| T |
41075448 |
tccaatagttggtattctggatttctggtggtgtgtgcttagttttgacattgagatctgctgtaactgtattttgtgattatccgattgtctaacacat |
41075547 |
T |
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| Q |
400 |
gatagagtaggtcggctgcaagactgcaaccgttaacagaaggtgggtagagtctgcttgcgttgattatacatcc |
475 |
Q |
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| T |
41075548 |
gatagagtaggtcgtctgcaagactgcaacccttaacagaaggtgggtagagtttgcttgcgttgattatacatcc |
41075623 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 21 - 412
Target Start/End: Original strand, 41086649 - 41087040
Alignment:
| Q |
21 |
tggtaccatgaaggcaaatttgattggtatccggttattgagtggttgttttttggagtatacatgagtgaggtacctattcctttgaattcacgatgga |
120 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||| |||||||| ||||| |
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| T |
41086649 |
tggtaccatgaaggcaaatttgattggtatccggttattgattggttgtttttttgagtatacatgagtgaggtacctattcctctgaattcataatgga |
41086748 |
T |
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| Q |
121 |
ggtgatgctagtgtatcagagttctcctggttcctttt-ggactatcttaagggtctggtctaagtggtggaatacttatgtgtgtattttgtttagatg |
219 |
Q |
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| T |
41086749 |
ggtgttgctagtgtattagagttctcctggttcctttttggactattgtaagggtctggtgtaaatggtggaatactgatgtgtgtattttgtttacttg |
41086848 |
T |
|
| Q |
220 |
gggtgctagcctgtgtttctttatgatagttagtctcattcttagtttcagtatcagcttgagtcttgttaggagttaggtccaatagttggtattctgg |
319 |
Q |
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| T |
41086849 |
gggtgctagcctgtttttctttatgatagttagtctcattcttagtttcagtatcagcttgagtcttgttaggagtcaggtccggtggttggtattctgg |
41086948 |
T |
|
| Q |
320 |
atttctggtggtgtgtgcttagttttgacatt--gagatctgctgtaactgtattttgtgattatccggttgtctaacacatgatagagtaggtc |
412 |
Q |
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|||||||||||||||||||||||||||||||| ||||||| ||||| | |||| ||| | |||| ||||| |||||||||||| ||||||| |
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| T |
41086949 |
atttctggtggtgtgtgcttagttttgacattttgagatctattgtaattttattgtgt---tgtccgattgtccaacacatgatagtgtaggtc |
41087040 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 112; Significance: 2e-56; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 31 - 213
Target Start/End: Original strand, 48297241 - 48297424
Alignment:
| Q |
31 |
aaggcaaatttgattggtatccggttattgagtggttgttttttggagtatacatgagtgaggtacctattcctttgaattcacgatggaggtgatgcta |
130 |
Q |
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| T |
48297241 |
aaggaaaatttgattggtatcctattattgattggctgttttttggagtatacatgattgaggtacctattcctatgaattcatgatggaggtgatgcta |
48297340 |
T |
|
| Q |
131 |
gtgtatcagagttctcctggttcctt-ttggactatcttaagggtctggtctaagtggtggaatacttatgtgtgtattttgtt |
213 |
Q |
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| T |
48297341 |
gtgtattagagttctcctagttccttcctggaccatcgtaagggtctagtgtaagcggtggaatacttatgtgtgtattttgtt |
48297424 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 350 - 402
Target Start/End: Original strand, 48297462 - 48297514
Alignment:
| Q |
350 |
ttgagatctgctgtaactgtattttgtgattatccggttgtctaacacatgat |
402 |
Q |
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|||||||||| |||||||||||||| ||||| || | |||||||||||||||| |
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| T |
48297462 |
ttgagatctgttgtaactgtattttatgattgtctgattgtctaacacatgat |
48297514 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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