View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16523_low_1 (Length: 600)
Name: NF16523_low_1
Description: NF16523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16523_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 518; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 518; E-Value: 0
Query Start/End: Original strand, 18 - 592
Target Start/End: Original strand, 13081319 - 13081887
Alignment:
| Q |
18 |
tttatgttgccctatttgtcattgttaaataatgttattttaaaacttcactattttctagtcgtgtgttgtaacacagaatgcatatcctcaatgtttg |
117 |
Q |
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| T |
13081319 |
tttatgttgccctatttgtcattgttaaataatgttattttaaaacttcactattttctagtcgtgtgttgtaacacagaatgcatatcctcaatgtttg |
13081418 |
T |
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| Q |
118 |
gtctgataaaatttgcttagctaatatctgaagggaaatcgcaaaatacaatcaagataaacaaatcggaaattaaaattcaacccttcgattgttcgtt |
217 |
Q |
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| T |
13081419 |
gt-tgataaaatttgcgtagctaatatctgaagggaaatcgcaaaatacaatcaagataaacaaatcggaaattaaaattcaagccttcgattgttcgtt |
13081517 |
T |
|
| Q |
218 |
gtaaatattcatgaatcaaggattatgcgaattaccagttgtggctcagaccctttaccgacgagaactggagacgaatctccaacgttgttcaaccaac |
317 |
Q |
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| T |
13081518 |
gtaaatattcatgaatcaaggattatgcgaattaccagttgtagctcagaccctttaccgacgagaactg-agacgaatctccaacgttgttcaaccaac |
13081616 |
T |
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| Q |
318 |
aaaatctctacgtagtcccatgaaggctgaagctcctaactaaatgataatctccaaatatatatattcaagatttccactgcattttcttaattagaaa |
417 |
Q |
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| T |
13081617 |
aaaatctctatgtagtcccatgaaggctgaagttcctaactaaatgataatctccaaatat----attcaagatttccactgcattttcttaattagaaa |
13081712 |
T |
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| Q |
418 |
gttaatctccaaaataaacattacccaaattcaaagtttacttaccatttcaaaatcagtttatgatccttaagtaatgatctgaagccttgtgtaggtt |
517 |
Q |
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| T |
13081713 |
gttaatctccaaaataaacattacccaaattcaaagtttacttaccatttcaaaatcagtttatgatccttaagaaatgatctgaagccttgtgtaggtt |
13081812 |
T |
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| Q |
518 |
tggacaaggaaaaccacctttagcaaaaaactgcagaatcaattgtcactatgtatcatataacttgagtataat |
592 |
Q |
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| T |
13081813 |
tggacaaggaaaaccacctttagcaaaaaactgcagaatcaattgtcactatgtatcatataacttgagtataat |
13081887 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 452 - 586
Target Start/End: Complemental strand, 37291759 - 37291619
Alignment:
| Q |
452 |
agtttacttaccatttcaaaatca--gtttatgatccttaagtaatgatctgaagccttgtgtaggtttggacaaggaaaaccacctttagcaaaaaact |
549 |
Q |
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||||| ||||||||||||||||| ||||||||||||||| || ||||| |||| ||||| || ||||||||||||||||| | ||||||||||| |
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| T |
37291759 |
agttttcttaccatttcaaaatctttgtttatgatccttaaatagtgatcagaaggattgtggagagttggacaaggaaaaccatttgcagcaaaaaact |
37291660 |
T |
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| Q |
550 |
gca--gaatcaattgtca--ctatgtatcatataacttgag |
586 |
Q |
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| T |
37291659 |
gcatcgaatcaagtgtcacgctatgtataatataatttgag |
37291619 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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