View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16523_low_10 (Length: 291)

Name: NF16523_low_10
Description: NF16523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16523_low_10
NF16523_low_10
[»] chr2 (15 HSPs)
chr2 (105-291)||(35343750-35343936)
chr2 (18-108)||(35343612-35343702)
chr2 (22-108)||(35348307-35348393)
chr2 (130-228)||(35355304-35355403)
chr2 (208-285)||(35348489-35348566)
chr2 (17-95)||(35345987-35346065)
chr2 (22-100)||(35355589-35355667)
chr2 (34-108)||(35371478-35371552)
chr2 (22-100)||(35368116-35368194)
chr2 (21-100)||(35340577-35340657)
chr2 (22-96)||(35351004-35351078)
chr2 (22-83)||(35374296-35374357)
chr2 (185-216)||(35340467-35340498)
chr2 (22-85)||(35364256-35364319)
chr2 (27-100)||(35335492-35335565)
[»] chr4 (3 HSPs)
chr4 (17-62)||(9063698-9063743)
chr4 (17-62)||(9072764-9072809)
chr4 (22-62)||(9060407-9060447)


Alignment Details
Target: chr2 (Bit Score: 167; Significance: 2e-89; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 105 - 291
Target Start/End: Original strand, 35343750 - 35343936
Alignment:
Q  105 agttcgaaattagaacttaacaagtttagtgcctataaataggtttgatgtcattataattgttctgcttttttctgtttctaacattttacttttatca 204  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||    
T  35343750 agttcgaaattagaacttaacaagtttagtgcctataaataggtttgatgtcattataattgtactgcttttttccgtttctaacattttacttttatca 35343849  T
Q  205 atacaaaagagtgttaagttttgaataatgatacttggcacgaaaataatttcgcgcaaaacacacgagttagtatctagctcacac 291  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||| ||||||||||    
T  35343850 atacaaaagagtgttaagttttgaataatgatacttggcacaaaaataatttcgcgtaaaacacacgagttagtatgtagctcacac 35343936  T

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Target: chr2; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 18 - 108
Target Start/End: Original strand, 35343612 - 35343702
Alignment:
Q  18 caaagaaggtgatgatgacgatgatggtggttacgactatgctccagccgcctaaaacactaatgtgttaactcacattagtcttctagtt 108  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  35343612 caaagaaggcgatgatgacgatgatggtggttacgactatgctccagccgcctaaaacactaatgtgttaacttacattagtcttctagtt 35343702  T

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Target: chr2; HSP #3
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 22 - 108
Target Start/End: Original strand, 35348307 - 35348393
Alignment:
Q  22 gaaggtgatgatgacgatgatggtggttacgactatgctccagccgcctaaaacactaatgtgttaactcacattagtcttctagtt 108  Q
    |||||||||||||||||||||||||||||||||||||||||  | ||||||||| |||||||||||||| |||||||||||||||||    
T  35348307 gaaggtgatgatgacgatgatggtggttacgactatgctcccactgcctaaaactctaatgtgttaacttacattagtcttctagtt 35348393  T

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Target: chr2; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 130 - 228
Target Start/End: Complemental strand, 35355403 - 35355304
Alignment:
Q  130 ttagtgcctata-aataggtttgatgtcattataattgttctgcttttttctgtttctaacattttacttttatcaatacaaaagagtgttaagttttga 228  Q
    |||||||||||  |||||| | ||||||||||||||||| || ||||||||  ||||||||||||||||||||| ||||||||| |||||||||||||||    
T  35355403 ttagtgcctatttaataggctcgatgtcattataattgtactacttttttccatttctaacattttacttttatgaatacaaaaaagtgttaagttttga 35355304  T

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Target: chr2; HSP #5
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 208 - 285
Target Start/End: Original strand, 35348489 - 35348566
Alignment:
Q  208 caaaagagtgttaagttttgaataatgatacttggcacgaaaataatttcgcgcaaaacacacgagttagtatctagc 285  Q
    |||||||||||||||||||||| ||||||||||||||||| || ||| |||| |||||||||||||||||||| ||||    
T  35348489 caaaagagtgttaagttttgaacaatgatacttggcacgacaagaatctcgcacaaaacacacgagttagtatgtagc 35348566  T

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Target: chr2; HSP #6
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 17 - 95
Target Start/End: Complemental strand, 35346065 - 35345987
Alignment:
Q  17 acaaagaaggtgatgatgacgatgatggtggttacgactatgctccagccgcctaaaacactaatgtgttaactcacat 95  Q
    |||| ||||| ||||||||||||||||||||||| ||||||||||| || || |||||| |||||||||||||| ||||    
T  35346065 acaaggaaggcgatgatgacgatgatggtggttatgactatgctcccgctgcgtaaaactctaatgtgttaacttacat 35345987  T

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Target: chr2; HSP #7
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 22 - 100
Target Start/End: Complemental strand, 35355667 - 35355589
Alignment:
Q  22 gaaggtgatgatgacgatgatggtggttacgactatgctccagccgcctaaaacactaatgtgttaactcacattagtc 100  Q
    ||||| |||||||||||||| |||||||| ||||||||||| || ||||||||| |||||||||||||| |||| ||||    
T  35355667 gaaggcgatgatgacgatgacggtggttatgactatgctcctgctgcctaaaactctaatgtgttaacttacataagtc 35355589  T

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Target: chr2; HSP #8
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 34 - 108
Target Start/End: Complemental strand, 35371552 - 35371478
Alignment:
Q  34 gacgatgatggtggttacgactatgctccagccgcctaaaacactaatgtgttaactcacattagtcttctagtt 108  Q
    ||||| || |||||||| ||||||||||| || ||||||||| |||||||||||||| |||||||||||||||||    
T  35371552 gacgacgacggtggttatgactatgctcccgctgcctaaaactctaatgtgttaacttacattagtcttctagtt 35371478  T

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Target: chr2; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 22 - 100
Target Start/End: Complemental strand, 35368194 - 35368116
Alignment:
Q  22 gaaggtgatgatgacgatgatggtggttacgactatgctccagccgcctaaaacactaatgtgttaactcacattagtc 100  Q
    ||||| ||||| |||||||| |||||||| ||||||||||| || || |||||| |||||||||||||| |||||||||    
T  35368194 gaaggcgatgacgacgatgacggtggttatgactatgctcccgctgcataaaactctaatgtgttaacttacattagtc 35368116  T

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Target: chr2; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 21 - 100
Target Start/End: Complemental strand, 35340657 - 35340577
Alignment:
Q  21 agaaggtgatgatgacgatgatggtggttacgactatgctccagccgcct-aaaacactaatgtgttaactcacattagtc 100  Q
    |||||||||||||||||| ||||||||||| |||||||||||||| || | ||||| ||||||||| |||| | |||||||    
T  35340657 agaaggtgatgatgacgacgatggtggttatgactatgctccagctgcataaaaactctaatgtgtgaacttatattagtc 35340577  T

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Target: chr2; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 22 - 96
Target Start/End: Complemental strand, 35351078 - 35351004
Alignment:
Q  22 gaaggtgatgatgacgatgatggtggttacgactatgctccagccgcctaaaacactaatgtgttaactcacatt 96  Q
    ||||||||||||||||||||||||||||| ||||| ||||| || || ||| || |||||||| ||||| |||||    
T  35351078 gaaggtgatgatgacgatgatggtggttatgactacgctcccgctgcataagactctaatgtgctaacttacatt 35351004  T

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Target: chr2; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 22 - 83
Target Start/End: Complemental strand, 35374357 - 35374296
Alignment:
Q  22 gaaggtgatgatgacgatgatggtggttacgactatgctccagccgcctaaaacactaatgt 83  Q
    |||||||||||||||||||| |||||||| ||||||||||| || || |||||| |||||||    
T  35374357 gaaggtgatgatgacgatgacggtggttatgactatgctcccgctgcataaaactctaatgt 35374296  T

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Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 185 - 216
Target Start/End: Complemental strand, 35340498 - 35340467
Alignment:
Q  185 ctaacattttacttttatcaatacaaaagagt 216  Q
    ||||||||||||||||||||||||||||||||    
T  35340498 ctaacattttacttttatcaatacaaaagagt 35340467  T

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Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 22 - 85
Target Start/End: Complemental strand, 35364319 - 35364256
Alignment:
Q  22 gaaggtgatgatgacgatgatggtggttacgactatgctccagccgcctaaaacactaatgtgt 85  Q
    ||||| ||||| |||||||| |||||||| ||||||||||| || || |||||| |||||||||    
T  35364319 gaaggcgatgacgacgatgacggtggttatgactatgctcccgctgcataaaactctaatgtgt 35364256  T

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Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 27 - 100
Target Start/End: Complemental strand, 35335565 - 35335492
Alignment:
Q  27 tgatgatgacgatgatggtggttacgactatgctccagccgcctaaaacactaatgtgttaactcacattagtc 100  Q
    ||||||||| || || |||||||| ||||||||||| || || ||||  | ||||||||||||| |||||||||    
T  35335565 tgatgatgatgacgacggtggttatgactatgctcccgctgcataaagtagtaatgtgttaacttacattagtc 35335492  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 17 - 62
Target Start/End: Original strand, 9063698 - 9063743
Alignment:
Q  17 acaaagaaggtgatgatgacgatgatggtggttacgactatgctcc 62  Q
    |||| ||||||||||||||||||||||||||||| |||||||||||    
T  9063698 acaaggaaggtgatgatgacgatgatggtggttatgactatgctcc 9063743  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 17 - 62
Target Start/End: Original strand, 9072764 - 9072809
Alignment:
Q  17 acaaagaaggtgatgatgacgatgatggtggttacgactatgctcc 62  Q
    |||| |||||||||||||||||||||||||| || |||||||||||    
T  9072764 acaaggaaggtgatgatgacgatgatggtggctatgactatgctcc 9072809  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 22 - 62
Target Start/End: Original strand, 9060407 - 9060447
Alignment:
Q  22 gaaggtgatgatgacgatgatggtggttacgactatgctcc 62  Q
    |||||||||||||||||||||||||| || || ||||||||    
T  9060407 gaaggtgatgatgacgatgatggtggatatgattatgctcc 9060447  T

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