View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16523_low_11 (Length: 280)
Name: NF16523_low_11
Description: NF16523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16523_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 17 - 263
Target Start/End: Original strand, 30334828 - 30335073
Alignment:
| Q |
17 |
atagacatcatgataaggatcaaaccattccaaatcaaatgaagaattttcaacctttaccaaccttattataaaagctccaaatcagatttcatcttgt |
116 |
Q |
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| T |
30334828 |
atagacatcatgataaggatcaaaccattccaaatcaaatgaagaattttcaacctttaccaaccttattataaaagctccaaatcagatttcatcttgt |
30334927 |
T |
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| Q |
117 |
cttgttatatccatattttagctttgacaatcgtgaaatatcaataatagcaacaataatatttgttgctctatacgaggaagtacaccttatatttata |
216 |
Q |
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| T |
30334928 |
cgtgttatatccatattttagctttgacaatcgtg-aatatcaataatagcaacaataattcttgttgctctatacgaggaagtacaccttatatttata |
30335026 |
T |
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| Q |
217 |
caaaatcgcaaaatgaagagaagataaacaattgtctaagatgtttc |
263 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
30335027 |
caaaatcgcaaaatgaagagaagataaacaattgtcgaagatgtttc |
30335073 |
T |
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