View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16523_low_13 (Length: 249)
Name: NF16523_low_13
Description: NF16523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16523_low_13 |
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Alignment Details
Target: chr2 (Bit Score: 208; Significance: 1e-114; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 35343908 - 35344151
Alignment:
| Q |
1 |
aaacacacgagttagtatgtagctcacacatgttccattttaattccaactcgcttcatgcattaataggattcgcgacagttgtggtgcctccggtgga |
100 |
Q |
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| T |
35343908 |
aaacacacgagttagtatgtagctcacacatgttccattttaattccaactcgcttcatgcattaataggattcgcgacagttgtggtgcctccagtgga |
35344007 |
T |
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| Q |
101 |
gaaaattccttaatcaccatgactacaaaaagtttattttaacgtcagacgtgattatcagtttgtaactgaggaaaaaatttgt-aatctgcataaaag |
199 |
Q |
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| T |
35344008 |
gaaaattccttaatcaccgtgactaaaaagagtttattttaacgtcaggcgtgattatcagtttgtaactgaggaagaaatttgtaaatctgcataaaag |
35344107 |
T |
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| Q |
200 |
aatccaaaccacatttcccatctcatctcattcccttcttctca |
243 |
Q |
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| T |
35344108 |
aatccaaaccacatttcccatctcatctcattcccttgttctca |
35344151 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 35348544 - 35348771
Alignment:
| Q |
1 |
aaacacacgagttagtatgtagctcacacatgttccattttaattccaactc----------gcttcatgcattaataggattcgcgacagttgtggtgc |
90 |
Q |
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| T |
35348544 |
aaacacacgagttagtatgtagcacacttaggttccattttaattctaactcaaaataactcgcctcaagcaataataggatttgcgatatctgtggtgc |
35348643 |
T |
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| Q |
91 |
ctccg---gtggagaaaattccttaatcaccatgactacaaaaagtttattttaacgtcagacgtgattatcagtttgtaactgaggaaaaaatttgt-a |
186 |
Q |
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| T |
35348644 |
ttctgactgtggaggaaattccttaatcaccatgactagacagagtttattttaacgtcaggcacgattatcagtttgtaaccgaggtagaaatttgtaa |
35348743 |
T |
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| Q |
187 |
atctgcataaaagaatccaaaccacatt |
214 |
Q |
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| T |
35348744 |
atctgcataaaagaatccaaaccacatt |
35348771 |
T |
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