View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16523_low_14 (Length: 241)
Name: NF16523_low_14
Description: NF16523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16523_low_14 |
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Alignment Details
Target: chr4 (Bit Score: 207; Significance: 1e-113; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 20 - 230
Target Start/End: Original strand, 38248024 - 38248234
Alignment:
| Q |
20 |
gtgattatatatgataaaaaatgtcaatattgtctcggtgtccgacactacgacacatctttaatctcaagtatcaatgctatattaggtgtaaatatag |
119 |
Q |
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| T |
38248024 |
gtgattatatatgataaaaaatgtcaatattgtctcggtgtccgacactacgacacatctttaatctcaagtatcaatgctatattaggtgtaaatatag |
38248123 |
T |
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| Q |
120 |
aatccctcttaaggggcagaatcatgattgattagacccttccagattgtagtgggagacttgtccttttcacatgaacacacccatttccctcctattg |
219 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38248124 |
aatccctcttaaggggcagaatcatgattgattatacccttccagattgtagtgggagacttgtccttttcacatgaacacacccatttccctcctattg |
38248223 |
T |
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| Q |
220 |
atctgtgctgc |
230 |
Q |
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||||||||||| |
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| T |
38248224 |
atctgtgctgc |
38248234 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 20 - 163
Target Start/End: Original strand, 38253055 - 38253199
Alignment:
| Q |
20 |
gtgattatatatgataaaaaatgtcaatattgtctcggtgtccgacac-tacgacacatctttaatctcaagtatcaatgctatattaggtgtaaatata |
118 |
Q |
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| T |
38253055 |
gtgattatatatgataaaaaatgccaatattgtctcggtgtccgacacgtgttacacatctttaatctcaagtgtcggtgctatattgagtgtaaatatg |
38253154 |
T |
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| Q |
119 |
gaatccctcttaaggggcagaatcatgattgattagacccttcca |
163 |
Q |
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| T |
38253155 |
gaatccctcttaagaggcagaatcattattgattagacccttcca |
38253199 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 166 - 230
Target Start/End: Original strand, 38253323 - 38253387
Alignment:
| Q |
166 |
ttgtagtgggagacttgtccttttcacatgaacacacccatttccctcctattgatctgtgctgc |
230 |
Q |
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| T |
38253323 |
ttgtagtgggagacttgtcctttttacatgaacacacccatttccctccttttgatctatgctgc |
38253387 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 172 - 214
Target Start/End: Original strand, 38242976 - 38243018
Alignment:
| Q |
172 |
tgggagacttgtccttttcacatgaacacacccatttccctcc |
214 |
Q |
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| T |
38242976 |
tgggagacttgtcctcttcacatgaacacacccattttcctcc |
38243018 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 161 - 209
Target Start/End: Original strand, 38214072 - 38214120
Alignment:
| Q |
161 |
ccagattgtagtgggagacttgtccttttcacatgaacacacccatttc |
209 |
Q |
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| T |
38214072 |
ccagtttgtagtgggagacttgtcctcatcacatgaacacaaccatttc |
38214120 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 161 - 209
Target Start/End: Original strand, 38226451 - 38226499
Alignment:
| Q |
161 |
ccagattgtagtgggagacttgtccttttcacatgaacacacccatttc |
209 |
Q |
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| T |
38226451 |
ccagtttgtagtgggagacttgtcctcttcacatcaacacaaccatttc |
38226499 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 172 - 230
Target Start/End: Original strand, 38238001 - 38238059
Alignment:
| Q |
172 |
tgggagacttgtccttttcacatgaacacacccatttccctcctattgatctgtgctgc |
230 |
Q |
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| T |
38238001 |
tgggagacttgtcctcttcacatgaacacaggaatttccctccttatggtctgtgctgc |
38238059 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 161 - 230
Target Start/End: Original strand, 17454547 - 17454616
Alignment:
| Q |
161 |
ccagattgtagtgggagacttgtccttttcacatgaacacacccatttccctcctattgatctgtgctgc |
230 |
Q |
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| T |
17454547 |
ccagtttgcagtgggagacttgtcctcttcacatgaacacaaccatttccctcctcatggtctgtgctgc |
17454616 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 161 - 215
Target Start/End: Original strand, 17433468 - 17433522
Alignment:
| Q |
161 |
ccagattgtagtgggagacttgtccttttcacatgaacacacccatttccctcct |
215 |
Q |
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| T |
17433468 |
ccagtttgtagtgggagacttgtcctcttcacatgaacacaaccattttcctcct |
17433522 |
T |
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