View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16523_low_15 (Length: 221)

Name: NF16523_low_15
Description: NF16523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16523_low_15
NF16523_low_15
[»] chr6 (2 HSPs)
chr6 (15-95)||(301231-301311)
chr6 (140-202)||(301100-301166)
[»] chr2 (9 HSPs)
chr2 (15-95)||(32799909-32799989)
chr2 (20-95)||(32309077-32309152)
chr2 (20-95)||(32565683-32565758)
chr2 (20-95)||(32806868-32806943)
chr2 (20-95)||(32815305-32815380)
chr2 (15-95)||(28215862-28215942)
chr2 (152-194)||(32305242-32305284)
chr2 (57-89)||(28216008-28216040)
chr2 (62-95)||(28220194-28220227)


Alignment Details
Target: chr6 (Bit Score: 73; Significance: 2e-33; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 15 - 95
Target Start/End: Complemental strand, 301311 - 301231
Alignment:
Q  15 gagatgaacgggaaggactacaatgaatgcaactatgaaccatgggttgaagatgaagaatctcctcattttcttgatgat 95  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  301311 gagaagaacgggaaggactacaatgaatgcaactatgaaccatgggttgaagatgaagaatcttctcattttcttgatgat 301231  T

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Target: chr6; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 140 - 202
Target Start/End: Complemental strand, 301166 - 301100
Alignment:
Q  140 tggttagttagcagcatattcatactcttttta----tataggaatggactcactaggggtaaccat 202  Q
    ||||||||||||| |||||||||||||||||||    ||||||||||||||||||||||||||||||    
T  301166 tggttagttagcatcatattcatactctttttatatatataggaatggactcactaggggtaaccat 301100  T

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Target: chr2 (Bit Score: 69; Significance: 4e-31; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 15 - 95
Target Start/End: Original strand, 32799909 - 32799989
Alignment:
Q  15 gagatgaacgggaaggactacaatgaatgcaactatgaaccatgggttgaagatgaagaatctcctcattttcttgatgat 95  Q
    |||| |||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32799909 gagaagaacaggaaggaatacaatgaatgcaactatgaaccatgggttgaagatgaagaatctcctcattttcttgatgat 32799989  T

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Target: chr2; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 20 - 95
Target Start/End: Complemental strand, 32309152 - 32309077
Alignment:
Q  20 gaacgggaaggactacaatgaatgcaactatgaaccatgggttgaagatgaagaatctcctcattttcttgatgat 95  Q
    |||| ||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  32309152 gaacaggaaggaatacaatgaatgcaactatgatccatgggttgaagatgaagaatctcctcattttcttgatgat 32309077  T

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Target: chr2; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 20 - 95
Target Start/End: Original strand, 32565683 - 32565758
Alignment:
Q  20 gaacgggaaggactacaatgaatgcaactatgaaccatgggttgaagatgaagaatctcctcattttcttgatgat 95  Q
    |||| ||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  32565683 gaacaggaaggaatacaatgaatgcaactatgatccatgggttgaagatgaagaatctcctcattttcttgatgat 32565758  T

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Target: chr2; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 20 - 95
Target Start/End: Original strand, 32806868 - 32806943
Alignment:
Q  20 gaacgggaaggactacaatgaatgcaactatgaaccatgggttgaagatgaagaatctcctcattttcttgatgat 95  Q
    |||| ||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  32806868 gaacaggaaggaatacaatgaatgcaactatgatccatgggttgaagatgaagaatctcctcattttcttgatgat 32806943  T

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Target: chr2; HSP #5
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 20 - 95
Target Start/End: Original strand, 32815305 - 32815380
Alignment:
Q  20 gaacgggaaggactacaatgaatgcaactatgaaccatgggttgaagatgaagaatctcctcattttcttgatgat 95  Q
    |||| ||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  32815305 gaacaggaaggaatacaatgaatgcaactatgatccatgggttgaagatgaagaatctcctcattttcttgatgat 32815380  T

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Target: chr2; HSP #6
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 15 - 95
Target Start/End: Original strand, 28215862 - 28215942
Alignment:
Q  15 gagatgaacgggaaggactacaatgaatgcaactatgaaccatgggttgaagatgaagaatctcctcattttcttgatgat 95  Q
    |||| |||| ||||||||| ||||||||||||||| || ||||| ||||||||||||||||||||||||||||||||||||    
T  28215862 gagaagaacaggaaggactgcaatgaatgcaactaagatccatgtgttgaagatgaagaatctcctcattttcttgatgat 28215942  T

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Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 152 - 194
Target Start/End: Complemental strand, 32305284 - 32305242
Alignment:
Q  152 agcatattcatactctttttatataggaatggactcactaggg 194  Q
    ||||||||  |||||||||||||||||||||||||||||||||    
T  32305284 agcatattgctactctttttatataggaatggactcactaggg 32305242  T

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Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 57 - 89
Target Start/End: Original strand, 28216008 - 28216040
Alignment:
Q  57 tgggttgaagatgaagaatctcctcattttctt 89  Q
    |||||||||||||||||||||||||||||||||    
T  28216008 tgggttgaagatgaagaatctcctcattttctt 28216040  T

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Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 62 - 95
Target Start/End: Complemental strand, 28220227 - 28220194
Alignment:
Q  62 tgaagatgaagaatctcctcattttcttgatgat 95  Q
    |||||||||||| |||||||||||||||||||||    
T  28220227 tgaagatgaagattctcctcattttcttgatgat 28220194  T

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