View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16523_low_16 (Length: 214)

Name: NF16523_low_16
Description: NF16523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16523_low_16
NF16523_low_16
[»] chr6 (12 HSPs)
chr6 (13-195)||(31213829-31214011)
chr6 (12-192)||(31229378-31229558)
chr6 (95-194)||(31224180-31224279)
chr6 (49-195)||(30985947-30986093)
chr6 (49-195)||(30992111-30992257)
chr6 (109-194)||(31189870-31189955)
chr6 (109-194)||(31201677-31201762)
chr6 (99-194)||(30960679-30960774)
chr6 (97-195)||(30954932-30955030)
chr6 (109-179)||(31145827-31145897)
chr6 (109-179)||(31172140-31172210)
chr6 (96-195)||(30944671-30944770)
[»] chr8 (1 HSPs)
chr8 (30-80)||(44035257-44035307)


Alignment Details
Target: chr6 (Bit Score: 139; Significance: 6e-73; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 139; E-Value: 6e-73
Query Start/End: Original strand, 13 - 195
Target Start/End: Original strand, 31213829 - 31214011
Alignment:
Q  13 aagaatatgaccaacaacttcgaagtcaaactaggacaaggtggttatggtacggtatacaaaggaaatctactcaatgaccgtcttgtggccgtgaaga 112  Q
    ||||| ||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| ||||||||||||||||    
T  31213829 aagaaaatgactaacaacttcgaagtcaaactaggacaaggtggttatggtacagtatacaaaggaaagctactcaatgaccgccttgtggccgtgaaga 31213928  T
Q  113 tattgaatgcatccaaaggaaaaggtgaagaatttatgaatgaggtttctagcattactaaaacctctcacgtgaatgttgtt 195  Q
    |||| || |||||||||||||||||||||||||||||||| |||||||||||||| || |||||||||||||| |||||||||    
T  31213929 tattaaacgcatccaaaggaaaaggtgaagaatttatgaacgaggtttctagcataacaaaaacctctcacgttaatgttgtt 31214011  T

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Target: chr6; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 12 - 192
Target Start/End: Original strand, 31229378 - 31229558
Alignment:
Q  12 gaagaatatgaccaacaacttcgaagtcaaactaggacaaggtggttatggtacggtatacaaaggaaatctactcaatgaccgtcttgtggccgtgaag 111  Q
    |||||| ||| ||||||||||| |||||||| |||||||||| ||||||| ||| |||||| ||||||| ||| |||||||  | | ||||||||| |||    
T  31229378 gaagaaaatggccaacaacttcaaagtcaaattaggacaaggcggttatgttacagtatacgaaggaaagctagtcaatgattgccctgtggccgtaaag 31229477  T
Q  112 atattgaatgcatccaaaggaaaaggtgaagaatttatgaatgaggtttctagcattactaaaacctctcacgtgaatgtt 192  Q
    ||| ||||    || |||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  31229478 atactgaaaaagtctaaaggaaatggtgatgaatttatgaatgaggtttctagcattactaaaacctctcacgttaatgtt 31229558  T

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Target: chr6; HSP #3
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 95 - 194
Target Start/End: Original strand, 31224180 - 31224279
Alignment:
Q  95 gtcttgtggccgtgaagatattgaatgcatccaaaggaaaaggtgaagaatttatgaatgaggtttctagcattactaaaacctctcacgtgaatgttgt 194  Q
    |||||||||| |||||||||||||||| ||| |||||||| ||||| |||||||| ||||||||| |||| ||| ||| ||||||||| || ||||||||    
T  31224180 gtcttgtggcagtgaagatattgaatgtatcaaaaggaaatggtgaggaatttattaatgaggttgctagtatttctagaacctctcatgttaatgttgt 31224279  T

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Target: chr6; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 49 - 195
Target Start/End: Original strand, 30985947 - 30986093
Alignment:
Q  49 caaggtggttatggtacggtatacaaaggaaatctactcaatgaccgtcttgtggccgtgaagatattgaatgcatccaaaggaaaaggtgaagaattta 148  Q
    ||||| |||| |||| |||| |||||||||||  || ||||||    |||||| || ||||||||||| |||||||| |||||||| |||||||| ||||    
T  30985947 caagggggttttggtgcggtgtacaaaggaaagttattcaatggttctcttgtagcagtgaagatattaaatgcatcaaaaggaaatggtgaagacttta 30986046  T
Q  149 tgaatgaggtttctagcattactaaaacctctcacgtgaatgttgtt 195  Q
    | ||||||||| |||| ||||||| |||||| || || |||||||||    
T  30986047 ttaatgaggttgctagtattactagaacctcacatgttaatgttgtt 30986093  T

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Target: chr6; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 49 - 195
Target Start/End: Original strand, 30992111 - 30992257
Alignment:
Q  49 caaggtggttatggtacggtatacaaaggaaatctactcaatgaccgtcttgtggccgtgaagatattgaatgcatccaaaggaaaaggtgaagaattta 148  Q
    ||||| |||| |||| |||| |||||||||||  || ||||||    |||||| || ||||||||||| |||||||| |||||||| |||||||| ||||    
T  30992111 caagggggttttggtgcggtgtacaaaggaaagttattcaatggttctcttgtagcagtgaagatattaaatgcatcaaaaggaaatggtgaagacttta 30992210  T
Q  149 tgaatgaggtttctagcattactaaaacctctcacgtgaatgttgtt 195  Q
    | ||||||||| |||| ||||||| |||||| || || |||||||||    
T  30992211 ttaatgaggttgctagtattactagaacctcacatgttaatgttgtt 30992257  T

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Target: chr6; HSP #6
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 109 - 194
Target Start/End: Complemental strand, 31189955 - 31189870
Alignment:
Q  109 aagatattgaatgcatccaaaggaaaaggtgaagaatttatgaatgaggtttctagcattactaaaacctctcacgtgaatgttgt 194  Q
    |||||||||||| ||||||||||||| |||||||||||||| ||||| |||||||| ||||||| |||||| || || ||||||||    
T  31189955 aagatattgaattcatccaaaggaaacggtgaagaatttattaatgaagtttctagtattactagaacctcacatgttaatgttgt 31189870  T

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Target: chr6; HSP #7
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 109 - 194
Target Start/End: Complemental strand, 31201762 - 31201677
Alignment:
Q  109 aagatattgaatgcatccaaaggaaaaggtgaagaatttatgaatgaggtttctagcattactaaaacctctcacgtgaatgttgt 194  Q
    |||||||||||| ||||||||||||| |||||||||||||| ||||||||| |||| ||||||| |||||| || || ||||||||    
T  31201762 aagatattgaattcatccaaaggaaatggtgaagaatttattaatgaggttgctagtattactagaacctcacatgttaatgttgt 31201677  T

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Target: chr6; HSP #8
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 99 - 194
Target Start/End: Original strand, 30960679 - 30960774
Alignment:
Q  99 tgtggccgtgaagatattgaatgcatccaaaggaaaaggtgaagaatttatgaatgaggtttctagcattactaaaacctctcacgtgaatgttgt 194  Q
    |||||| |||||||| ||||||||||| |||||||| |||||||||||||| || |||||| |||| ||||||| |||||| || || ||||||||    
T  30960679 tgtggcagtgaagattttgaatgcatcaaaaggaaacggtgaagaatttattaacgaggttgctagtattactagaacctcacatgttaatgttgt 30960774  T

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Target: chr6; HSP #9
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 97 - 195
Target Start/End: Original strand, 30954932 - 30955030
Alignment:
Q  97 cttgtggccgtgaagatattgaatgcatccaaaggaaaaggtgaagaatttatgaatgaggtttctagcattactaaaacctctcacgtgaatgttgtt 195  Q
    |||||||| ||||||||  | |||||||| |||||||| |||||||||||||| ||||||||| |||| ||||||| |||||| || || |||||||||    
T  30954932 cttgtggcagtgaagatgctaaatgcatcaaaaggaaatggtgaagaatttattaatgaggttactagtattactagaacctcacatgttaatgttgtt 30955030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 109 - 179
Target Start/End: Complemental strand, 31145897 - 31145827
Alignment:
Q  109 aagatattgaatgcatccaaaggaaaaggtgaagaatttatgaatgaggtttctagcattactaaaacctc 179  Q
    |||||||||||| ||||||||||||| |||||||||||||| ||||||||||| || ||||||| ||||||    
T  31145897 aagatattgaattcatccaaaggaaacggtgaagaatttattaatgaggtttccagtattactagaacctc 31145827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 109 - 179
Target Start/End: Complemental strand, 31172210 - 31172140
Alignment:
Q  109 aagatattgaatgcatccaaaggaaaaggtgaagaatttatgaatgaggtttctagcattactaaaacctc 179  Q
    |||||||||||| ||||||||||||| |||||||||||||| |||||||||||||| ||| ||| ||||||    
T  31172210 aagatattgaatccatccaaaggaaacggtgaagaatttattaatgaggtttctagtatttctagaacctc 31172140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 96 - 195
Target Start/End: Original strand, 30944671 - 30944770
Alignment:
Q  96 tcttgtggccgtgaagatattgaatgcatccaaaggaaaaggtgaagaatttatgaatgaggtttctagcattactaaaacctctcacgtgaatgttgtt 195  Q
    |||||| || |||||||| ||||||||||| |||||||  |||||||| ||||| ||||||||| |||| ||||||| |||||| || || |||||||||    
T  30944671 tcttgtagcagtgaagattttgaatgcatcgaaaggaattggtgaagactttattaatgaggttactagtattactagaacctcacatgttaatgttgtt 30944770  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 80
Target Start/End: Original strand, 44035257 - 44035307
Alignment:
Q  30 cttcgaagtcaaactaggacaaggtggttatggtacggtatacaaaggaaa 80  Q
    |||| |||| ||||||||| |||||||||||||| | ||||||||||||||    
T  44035257 cttcaaagttaaactaggagaaggtggttatggttctgtatacaaaggaaa 44035307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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