View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16523_low_2 (Length: 506)
Name: NF16523_low_2
Description: NF16523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16523_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 237; Significance: 1e-131; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 18 - 312
Target Start/End: Original strand, 43224025 - 43224316
Alignment:
| Q |
18 |
aatttctccaatctctgtgcaagacagcaatcgataggataatacatgttgtaaaaatcctttaccaagaatataaacgacatgagaacnnnnnnnntgc |
117 |
Q |
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| T |
43224025 |
aatttctccaatctctgtgcaagacagcaatcgatagggtaatacatgttgtaaaaatcctttaccaagaataaaaacgacatgagaacaaaaaaaatgc |
43224124 |
T |
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| Q |
118 |
tcatgtgcatgctccaatcggtccatctggtcctagccattgaacctaaaatgacagacaatattgtagtaaaattagatatgatatttacactcaacaa |
217 |
Q |
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| T |
43224125 |
tcatgtgcatgctccaatcggcccatctggtcctagccattgaacctaaaatgacagaca---ttgtagtaaaattagatatgatatttacactcaacaa |
43224221 |
T |
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| Q |
218 |
caaggaccaaataaaaacaaagttaaagcgatatcaaaccattctggtgcgatggtggacgaacaaccatcgttaatttcctgatgccacaaaat |
312 |
Q |
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| T |
43224222 |
caaggaccaaataaaaacaaagttaaagcgatatcaaaccattctggtgtgatggtggacgaacaatcatcgttaatttcctgatgccacaaaat |
43224316 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 366 - 490
Target Start/End: Original strand, 43224465 - 43224589
Alignment:
| Q |
366 |
tatcgaaaggggtttctttttatttggtacacaatgatttgggtgttttggaatgtgagaaatgataggattttcaacagtagaattgtgaccatcaatg |
465 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
43224465 |
tatcgaaaggggtttctttttatttggcacacaatgatttgggtgttttggaatgtgagaaatgataggattttcaactgtagaattgtgaccatcaatg |
43224564 |
T |
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| Q |
466 |
agaattttggggatatcaaggttat |
490 |
Q |
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| T |
43224565 |
aaatttttggggatatcaaggttat |
43224589 |
T |
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