View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16523_low_3 (Length: 502)
Name: NF16523_low_3
Description: NF16523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16523_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 370; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 8 - 485
Target Start/End: Complemental strand, 13766225 - 13765748
Alignment:
| Q |
8 |
tcagctttcaacatatttcgcaaccgtgtaaagaagttgagattaaatccgtccggtatagggatctcgttaccatccacactagaaaccaccaattcca |
107 |
Q |
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| T |
13766225 |
tcagctttcaacatatttcgcaaccgtataaagaagttgagattaaatccgtccggcctagggctctcgttaccatccagactagaaaccaccaattcca |
13766126 |
T |
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| Q |
108 |
tttttgaaaccaagactagagctaacaacaggacattatccaaattagaaatatgaatgaaatcaatatcgaccatggtcggtctataggtctatgggtc |
207 |
Q |
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| T |
13766125 |
tttttgaaaccaagaattgagctgacaacagaacattatccaaattagaaatatgaaagaaatcaatatcgcccatggtcggtctataggtctatgggtc |
13766026 |
T |
|
| Q |
208 |
tgagaaatgatgcgtaaagaaattcacaatcgcttgtttgatctttgcaacatcctccatccacctttccaccctaggtgccgagatggaattcctcata |
307 |
Q |
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| T |
13766025 |
tgagaaatgatgcgtaaagaaattcacaatcgcttgtttgttctttgcaacatcatccatccacctttccaccctaggagccgagatggaattcctcata |
13765926 |
T |
|
| Q |
308 |
cctctattcttcacacaggcgtggaaataagttgtattatgtccttctctctctcaaccattttgctcttgaccattggaacatctacgagtcttagatc |
407 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||| |||| |
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| T |
13765925 |
cctctattcttcacacaggcgaggaaataagttgtattatgtccttctctctctcaaccactttgctcttgaccattggaacatctgcgagtcttggatc |
13765826 |
T |
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| Q |
408 |
ttcaaaatagtccacaaatacgccaaacactggttcttattagctacctccaccacaacaagatcccttcccttagcc |
485 |
Q |
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|||||| ||| ||||||| ||||||||||||||||||| |||||||||||| | |||||||||||| ||||||||| |
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| T |
13765825 |
gtcaaaacagtttacaaataggccaaacactggttcttatcagctacctccacaaaaacaagatccctccccttagcc |
13765748 |
T |
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